Parasteatoda tepidariorum (common house spider): 107442626
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Entry
107442626 CDS
T06106
Name
(RefSeq) collagen alpha-1(I) chain isoform X1
KO
K19719
collagen type II alpha
Organism
ptep
Parasteatoda tepidariorum (common house spider)
Pathway
ptep04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ptep00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107442626
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptep00536
]
107442626
Glycosaminoglycan binding proteins [BR:
ptep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107442626
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
CFC
Motif
Other DBs
NCBI-GeneID:
107442626
NCBI-ProteinID:
XP_042898228
LinkDB
All DBs
Position
Unknown
AA seq
1480 aa
AA seq
DB search
MRALLGALWALVVVAVVVHAQDYNESYDDTACDYNGEYYENGEEWNPDPCTLCKCLLGNT
VCEEEACPDIECKTQKYIPLGKCCPICVEDDEPAQPEQTVLPVEPPSEPVDGHRGAVEPP
TYPLVPLPGPRGTQGERGTPGYPGERGEPGEIGSHGVPGRPGPPGPPGDLSAWFQSLAVQ
QGLGGEKGPPPDAFQFMQAQVGPVGPRGSPGPAGPSGPQGFQGARGETGEPGPPGTLGLS
GERGLPGLPGKDGEPGEDGRPGPSGPPGPPGPRGLPGMPGVPGAKGHRGFPGLDGSKGEQ
GPQGEKGMQGPSGKMGATGLLGPPGPRGERGREGPTGPPGIRGIDGLPGPPGPPGPIGRP
GPPGFPGSPGAKGDAGPGGPKGNQGLQGPRGEAGKPGLPGEQGPMGPSGKDGASGEKGSQ
GESGAAGPPGFPGARGPPGLSGSPGLTGPKGSPGIPGEPGIKGETGRKGEQGGPGPRGLP
GTPGQAGKRGKSGAPGSPGPNGPPGERGLAGSRGLPGPDGPAGMKGAQGDRGPQGPQGPK
GSQGESGRPGPQGLQGLRGLAGRPGLPGKDGTPGERGQPGADGKPGEPGPQGIQGLPGLM
GLPGAKGDQGEAGQDGQPGPSGPPGPRGDSGKEGTPGPPGPAGPPGEHGERGPPGPQGAA
GFQGLPGITGNPGQPGKDGEPGLPGSPGAPGPAGERGERGFPGERGLQGVMGPPGARGDT
GPLGQDGIQGPPGEKGSKGHSGPSGLLGLPGSRGEPGPRGPKGDRGDHGPPGPEGPQGRP
GDQGPQGLVGPTGPPGESGEKGETGPPGPDGQPGSPGVQGDRGAPGPPGQQGFPGPVGLP
GATGIKGARGLAGPKGDQGNVGLPGSPGETGPQGQPGLRGPKGPRGEEGKKGDAGFPGAP
GRPGEPGHPGSPGNPGPSGPPGITGIKGAPGDSGKPGNPGPPGNPGQPGFPGPKGEAGSE
GVPGLTGPPGPAGPAGDRGLPGIPGVQGRPGPPGPRGSPGDRGMEGKSGSDGPPGAQGLR
GPPGPPGPSGESGPQGHPGKEGQPGISGRPGDKGPPGPAGNPGPPGIQGIQGPPGPLGPT
GPVGERGERGETGPRGVPGPQGVRGQPGPSGPAGMKGERGDAGEQGMKGHRGLIGLQGMA
GQPGVSGEKGMTGPPGPPGMEGPPGSKGPPGRDGSPGNPGLIGPVGPRGHSGDSGKPGPV
GAPGPPGLPGPPGEPFGYEASALAALFSQGQMKGPDPALGDEPDKLFSPDTPIEEKQRLV
FEFYDKLIQEYEEFRKPNGEKKNPATTCKDLFVAHPELPSGTYWVDPNQGDPKDAIQAFC
NSESRATCVSARPEQIKKGSYFIGKKQETWFSTMNGGFTFNYKADRIQLSFLQLLSQNAE
QNVTVHCKNVFVHKDAKKSSQRAAKLMAYNDIELTADGNPMFTYTSILDNCQLRENKWAQ
TVLHYETDKPQRLPVVDLSLTDIGGRNQEFGFDLGPVCFS
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atgagggcccttctgggtgctctgtgggccctggttgttgtcgctgtagtagtacacgca
caggactataatgaaagttatgacgacacagcttgtgattacaatggagagtattatgag
aatggagaagaatggaatcccgatccgtgtacattatgtaaatgtcttcttggaaacacc
gtttgcgaggaagaagcttgtcctgacatagaatgcaaaactcaaaaatacattcccctt
ggtaaatgctgccctatatgtgtagaagatgatgaaccagctcaacctgaacaaactgta
ttacccgtggagcctccttcagaacctgttgatggacaccgaggggcagttgaaccaccc
acctatcctctcgtaccacttcctggaccaaggggcacccaaggggaacgaggaacacct
ggatatcctggagaaaggggtgaacctggagaaattggttcgcatggagttcctggaaga
cctggaccacccggccctcccggagatttgagcgcctggtttcaaagtctggctgtgcag
cagggtcttggcggtgaaaagggacctcctccggatgcatttcagttcatgcaagcacaa
gtgggcccagttggaccaaggggatcaccagggccggcaggaccttcaggaccacaaggt
tttcaaggagctcgtggtgaaactggagagcctggaccacccggtactctagggctatct
ggagaaagaggacttcccggtcttcctggtaaagatggtgaacctggcgaagatggaaga
cctggcccctctgggcctccaggacctccaggtcctcgaggtcttcctggaatgcctgga
gttcccggagctaaaggacaccgaggatttcctggcctagatggatcaaaaggagaacaa
ggtcctcaaggagagaaaggaatgcaaggtccgtcaggaaaaatgggagctaccggctta
ttgggtccccctggtccaagaggtgaaaggggacgtgagggccctactggcccaccagga
ataagaggtattgatggcctgccgggacctcctggtccaccggggcccatcggaagaccg
ggacctccgggatttcctggttcacctggtgcaaagggagatgcaggacctggtggacca
aaggggaaccaaggattgcaaggaccccgtggagaggctggtaaaccaggtttacctggg
gaacaaggaccaatgggaccgtcaggaaaagatggagcttctggcgaaaaaggatctcaa
ggtgaaagtggagcagctggcccacctggttttcctggtgctcgcggacctcctggattg
tcgggcagtcccggattaactggaccgaaaggatcacctggtattccaggagagcctgga
ataaaaggagaaacagggcgtaaaggagaacaaggaggacctggaccaaggggcttgcca
ggaacacctggtcaagccggaaaaagaggaaaatctggagcccccggatccccaggcccg
aatggacctccaggagaacgtggtttggctggctctcgtggacttcctggaccggatgga
cctgcaggaatgaaaggagctcagggtgacagaggaccacaaggtcctcagggacctaaa
ggctctcagggtgaatctggtaggccaggaccacaaggtttacaaggattaaggggatta
gctggaaggcctggacttcctggcaaagatggaactcctggtgaaagaggtcaaccaggg
gctgatggaaaacctggtgagcctggaccacaaggtatccaaggtctgcctggccttatg
ggtttaccaggagctaaaggagatcagggagaagctggacaagatgggcaaccaggacct
tccggtccacccggacccagaggagattctggaaaggaaggaacgccaggtccaccggga
cccgctgggccacctggagaacatggggaacgaggacctccgggacctcaaggagcagct
ggatttcagggtcttcctggcataacaggaaatcctggccaaccaggaaaagatggagag
ccagggctaccaggatcacctggcgctcccgggccggctggtgagcgaggtgaaagagga
ttccctggtgagagaggtttacaaggagtaatgggtccaccaggtgctagaggtgacaca
ggaccactaggtcaagacggcattcaaggtccccctggtgaaaaaggctctaaaggacac
tctggtccatcaggtttactgggattacctggctcaagaggagaaccaggtcccagaggt
ccaaaaggagatagaggggatcatggaccaccaggtcctgaaggtccccaaggaagacct
ggagatcaaggaccgcaaggattggtaggacctactggaccacctggcgaatctggagaa
aaaggtgaaacaggaccaccaggtcctgatggacaacccggatctccaggtgttcaaggg
gatagaggagcaccaggcccaccaggacaacaaggcttccctggtccagtcggattgcct
ggagcaactggaattaagggagctcgaggacttgcaggaccaaaaggggaccaaggaaat
gttggacttcctggatcacccggagaaactggaccccaaggacagccaggacttcgtgga
ccaaaaggtccaagaggagaagaaggaaaaaaaggagatgccggcttccctggagcacca
ggccgtcctggagaacctggtcatcctggttcacctggtaatcccggaccatctggaccg
cctggaataactggaataaagggagcccctggtgatagtggtaagcctggaaatcctgga
ccacctggcaatcctgggcaaccaggatttcctggtcccaaaggagaagcgggatctgaa
ggagtacctggtttgactggtcctccaggacccgctggtccagccggagatcgaggattg
cctggtattcctggtgtacaaggtcgacctggtcctcctggacctcgaggatctcctggt
gatcgtggtatggaaggtaaaagtggctctgatggacctcctggagctcaaggtctccgt
gggcctcctggacccccaggaccatctggagaatctggaccacaaggccatcctggaaaa
gaaggacaacctggaatatctggaagaccaggagataaagggccaccaggacctgctgga
aacccgggaccacctggaatacaaggaattcaaggaccacctggaccccttggcccaact
ggacccgtaggagaaagaggtgagcgaggagaaacgggaccacgaggagtgccgggacca
cagggtgttaggggtcaaccaggacccagtggaccagctggaatgaaaggtgaacgtggt
gatgctggagaacaaggcatgaagggtcatcgaggtctaattggtcttcaaggaatggct
ggacaacctggtgtttctggtgagaagggcatgacaggacctcctggccctcctggaatg
gaaggtcctccaggatctaagggtccccctggtagagatggaagtccaggaaatcctggt
ttaataggtcccgtcggtcctagaggtcactctggtgattctggcaagccaggtccagtt
ggagcaccagggcctcctggtttaccaggacctcctggggaaccattcgggtacgaagca
agtgctttggctgccctgtttagccaaggacaaatgaaaggtccagatccagctttaggc
gacgaaccagacaaactgttttcacccgacactcccattgaagagaaacaacgattggtg
ttcgagttctacgataaacttattcaggaatatgaagaattcaggaagcccaacggagaa
aaaaagaatccagctacaacttgcaaagatctgtttgttgcccatccagaactaccaagc
ggaacctattgggtggatcctaaccaaggagatcctaaagatgccatccaagctttctgc
aattctgaaagtagagccacgtgtgtctcagctagacctgaacagatcaagaagggcagt
tacttcattggaaagaagcaagaaacatggtttagtacaatgaatggtggtttcacgttc
aactacaaagctgatcgaatccaactcagtttcttgcaactcctcagtcagaatgcagaa
caaaatgtgactgttcattgcaaaaatgtatttgttcataaagatgccaagaaaagtagc
cagagggctgccaagttaatggcttacaatgacatcgaattgactgcagatggaaatcct
atgttcacatatacatcgatattagataattgccagctgcgagaaaacaaatgggctcaa
acggtcttacactatgaaacagataaaccacaaagattgccagttgttgatctatctcta
acagacatcggtggaagaaatcaagaatttggattcgatcttggacctgtgtgcttctct
taa
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