Puntigrus tetrazona (Sumatra barb): 122347485
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Entry
122347485 CDS
T08985
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ptet04121
]
122347485 (pdzrn3b)
Enzymes [BR:
ptet01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122347485 (pdzrn3b)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122347485 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
zf-rbx1
U-box
TRAF3_RING
Tricorn_PDZ
TRAF2_zf
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
122347485
NCBI-ProteinID:
XP_043098766
LinkDB
All DBs
Position
6:complement(22073623..22148483)
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AA seq
1055 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKIVKLQHLAEHAEMCDYSPAKCRNKGCSEVL
NLKDMDAHMRESCDYRAVGICESGCGLMLTHKEQKLDNHCCLKALKAHNGALQGKVVSLD
KELKKQALKSTKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLSKSLSPPCKGG
ETKSVTAILHRESGSLGFNIVGGRPCADNKDGTSNEGIFVSKIVENGPADKEGGLQIHDR
IMEVNGKDLSKVTHDQAVEAFRTAKEPIMVQVLRRAPRPKPTGPSGEAQVVDISTQTDIT
FQHIMALSKLPASSPPVDVLEQYLLPEGHSPAHEYFDPSEFLEGMQHEIEREELEYEEVD
LYRTNIHDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EEAVALLTSEEHPNVCLLLARPEIQLDEGWMDDDRNDYLDDLHMDMLEQQHHQAMQFTAS
MLQQKKLEEDGGTTDTATLLSHHHEKDSGVGRTDDSTRNDESSEQENLADDQTSASTTLG
SRRRLAYSQDTLGSGDLPFSSESFISADYADADFLGDFPADECERFRELLELKCQMRSGG
SSGTPEQSLFWPGGGVGGGQGTVGEEGVDKELELLNEELRSIELECLSIVRAHRMQQLRE
QCREQSWMLHNSGFRNYNTSVDARRHELADISELPEKSDKDSSSAYNTGESCRSTPLTLE
LSPDNSLRRGNENQLEAGASSGTSGPSRILKPLLSPVQEACSPNRVRPTLSKESEPGIQP
EIRERKSGRHAQPQSPYKHAHIPAHAQHYQSYMQLIQQKSVEYAQSQMSLVSMCRDPVAS
ADLGPKMEWKVKIRSDGTRYITKRPVRDKLLKERALRIREERSGMTTDDDAISEMKMGRY
WSKEERKQHAVRAKEQRQRREFMKQSRMDCLKEQVGSAEDKKEVNIIELSHKKMMKKRNK
KIFDNWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcgtttcaagggggctgtggacccagacttcaaatgcaacttg
tgtaataaagttttggaggatccgctcactaccccgtgcggtcacgtcttctgcgccggc
tgcgtgctgccgtgggtcgtccagcagagcagctgcccggtcaaatgccaaaggatctcc
accaaagagctcaaccacgtcctccctctaaaaaacttaatattaaagttagacattaaa
tgtgacaatcacgcgcggggctgcgagaagatcgtcaaactccagcatctggcggagcac
gcggagatgtgcgattattcccctgccaaatgtaggaataagggatgcagcgaagtgctc
aaccttaaagatatggatgctcacatgcgtgaatcgtgtgattacagagcggtcgggata
tgcgagagtggatgcggattgatgctcactcacaaggagcagaagttggacaaccactgc
tgtttgaaagccctcaaagcgcacaacggcgcgctgcaagggaaagttgtcagcttggat
aaggagctgaagaaacaagctctcaaatcgactaaaagagagaaatcacttttggctcaa
ctgtcggcggttcacaacgagcttcagatgacagcgctgaagtatcagaagaaattcact
gaatacagcgccaggatcgactcgctgtccaagagcctctctccgccgtgtaagggtgga
gagaccaaaagtgtcacagctatactccatcgtgagtctggatctttaggcttcaatatt
gttggtggacgaccatgtgcggataataaagatggcacttcgaatgaaggaatctttgtg
tcgaagattgtggagaatgggccggcggataaagaagggggtttgcagatccatgacagg
ataatggaggtcaatggaaaggacttgtcaaaggtaactcatgaccaggctgtggaggcc
ttccgtacagctaaagagcccatcatggtccaggtgctacgccgggctcccaggcccaaa
cctacaggtccgagtggggaagcacaggtagtggacatcagcacccagacggacatcacc
ttccagcacatcatggccctcagcaaactgcctgcatcctccccgcctgtggatgtgctt
gagcagtatctgctaccagaaggacactctcctgctcatgaatacttcgaccccagtgaa
ttcctggagggcatgcagcatgagatagaaagagaagagctggaatatgaggaagtggat
ttatacagaactaatatccatgataaacttgggttaaccgtgtgctacaggaccgatgat
gaagatgagactgggatctatgtcagtgagattgatccgaacagcattgctgcaaaagat
ggacgaattcgagagggagatcgaatcatccagatcaatggcattgagattcagaaccgt
gaggaagcagtggctcttttaaccagtgaagaacatccaaatgtgtgcctgctattggct
cgaccagagatacagctggatgaaggctggatggatgacgacagaaacgactacctggat
gacctccacatggatatgttagagcaacaacaccatcaggctatgcagttcacagcaagc
atgctccagcagaagaagcttgaggaggatggaggtacaacagacactgctacgctgctc
tcccaccaccatgagaaggacagtggagtgggccgcacagacgacagcactcgtaacgat
gaaagctctgagcaggagaatcttgcagatgaccagaccagcgcctccacaacattaggg
agtcggcgcaggctcgcctacagtcaggacaccctaggcagtggcgaccttcccttcagc
agcgagtccttcatttctgcagactatgcggatgcggatttcttgggtgactttcctgct
gacgaatgcgagcggtttcgtgagcttttggagctcaagtgccagatgcggagcgggggc
agcagtggtaccccagaacagagtttgttctggcctggtgggggtgtaggtggcggacag
ggcaccgttggcgaggagggtgtcgacaaagagctggaacttctgaatgaggagctccgc
agcattgagctggagtgcctgagcatagtccgagcgcaccgcatgcagcagttgcgtgag
cagtgccgcgaacagtcctggatgctccacaacagcggtttccgcaactacaacacaagt
gtggatgcaagacgccacgagttagcggacatcagcgaactcccggaaaagtcagacaag
gacagctccagcgcgtacaacacgggcgaaagttgtcgtagcacgccgctcaccctagag
ctctcaccagacaactccttgcgacgtggaaatgaaaatcagctggaagcaggggcgagt
agtggtacctcgggtcctagcagaatcctcaaacctctgttgtctcccgtccaagaggct
tgcagccctaacagagttcgtccgaccttgtcaaaagagtccgagcctggaatccagcct
gaaatccgagaacgcaaatctggtcgccatgcccagccccagtcgccgtacaaacacgcc
cacatcccggcccacgcccagcactaccagagctacatgcaactgatccagcaaaagtcg
gtggagtacgctcaaagccaaatgagcctagtcagcatgtgccgggaccccgtcgcttct
gccgacttgggacccaagatggaatggaaagtgaagatccgcagcgatggtacacgctac
attaccaagcggcctgtccgggacaaactcctgaaagagcgagccctacggattcgagag
gagcgcagcgggatgactacagacgatgatgccatcagcgagatgaagatgggacgctac
tggagcaaagaggagcgcaagcaacacgccgtccgtgccaaagagcagcgtcagcgcagg
gaatttatgaagcaaagccgcatggactgtctgaaagagcaagtgggtagcgctgaagac
aagaaggaggtcaatatcattgaactgagtcacaaaaagatgatgaagaagaggaacaag
aaaatctttgacaactggatgactatccaggaactgctgacgcatggtacaaagtccccc
gatgggacacgagtgtacaactctctactgtcagtgaccacggtgtag
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