Puntigrus tetrazona (Sumatra barb): 122351380
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Entry
122351380 CDS
T08985
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122351380 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122351380 (bard1)
04121 Ubiquitin system [BR:
ptet04121
]
122351380 (bard1)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122351380 (bard1)
03400 DNA repair and recombination proteins [BR:
ptet03400
]
122351380 (bard1)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122351380 (bard1)
Ubiquitin system [BR:
ptet04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
122351380 (bard1)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122351380 (bard1)
DNA repair and recombination proteins [BR:
ptet03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122351380 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ank_4
Ank_3
BRCT
BRCT_2
PTCB-BRCT
ASFV_L11L
Motif
Other DBs
NCBI-GeneID:
122351380
NCBI-ProteinID:
XP_043104351
LinkDB
All DBs
Position
9:complement(19546224..19568760)
Genome browser
AA seq
677 aa
AA seq
DB search
MVSDTKKSDESFIPRNKKNIKIWFSPKSRKVRCCIEKPVNSNKSNEFQEKKANTSPASKD
LSVYNFTSSSQESGTSSPPRGKANMKIKKKRISQTCKATGGAQRLKTWTTQECKRLRLEA
INQQWAFGKEGAVDKDVEDEKVSSGDDNRRSGMRVTFHFPHSQPEETRKAVHQEQNQVPQ
KSIPSNLEVEETEKQSSAASSSPYCDQQVKPVTDVPQESNENTPGPPRLSLDKVHERTRE
DQDSEDPQRTPKQRRTSSGWRKTSSKEGAVSTKGRSRSLTVSKQSCEKQNAVPATPHLKR
KSSSARHKAGPAYMKKNHNGETPLHLAAVKGDVEEVRKLLAQGADPNLKDNAGWTPLHEA
CNLGHLGVMEELLRQGALLNTPGYQNDSPLHDAVRNGQIPVVKLLVERGASQSVLNMFGL
RPVDYALTPEMQEVLRTAPEAPHPVTTTPNPPASPSEAAGFVRETGPVVVIGSQLTQTQQ
KQLTKAAQLLGGKQVRSFCRAVTHVVVPDVPIMPSSLTALRGVLNGCWILTFSWVSCSLQ
AGSWVGECEYEAGDGPLRARVNRGSLLPPLFDGCFFYMLGSFCKPPKLELIQLVKEGGGQ
LLNRQPKPDSDVTQTLSAAAYHAQPGSDQILCTQYILYDPQSSYKPQKVRVGKVWSAPST
WFLECIAAFQLLPVPEH
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggtctccgataccaagaagtcggatgagagctttatccctaggaataagaagaacata
aaaatatggtttagcccaaagagtcgcaaagttcgctgttgcattgagaaacctgttaac
tcaaacaaatcaaatgaattccaggaaaagaaagccaatacatcacctgcttcaaaggac
ctgtccgtctacaacttcacctcttcctcccaggagtctgggacatcctctcctccacgg
gggaaggccaatatgaaaataaagaaaaaaagaatcagccaaacctgcaaagcaactggt
ggtgctcaaaggctcaaaacgtggactacgcaagaatgtaagaggctgaggctggaagct
atcaatcaacagtgggcctttggaaaagaaggtgctgtagacaaggatgtagaagatgag
aaagtgagttctggagatgacaacaggaggtccggtatgagagttactttccatttccct
cacagccagcctgaggagactcgtaaggctgtccatcaagaacagaatcaagttccccaa
aaaagcatcccaagcaatttggaagttgaagaaactgagaagcaaagctctgcagcttcc
agttcaccatattgcgatcaacaggttaaacctgtcactgatgtcccgcaggaatccaat
gaaaacactccagggcctcctcggttgtcccttgacaaagtgcatgagagaaccagagag
gatcaggacagcgaggatccacagaggacaccaaaacaacggcgaacatcttcaggatgg
aggaagacgtcatctaaagaaggagctgtttccactaaaggccgctctcggagtctgaca
gtgtccaaacagtcctgtgagaagcagaatgcggtgccagctacccctcaccttaagagg
aagtcttcaagtgcgagacacaaggcaggtcctgcttacatgaaaaagaaccacaatgga
gagacaccactgcacttagctgccgtaaagggtgatgtggaggaggtccgtaagctcctt
gctcagggagccgaccccaacctgaaggacaacgcgggctggacaccactgcacgaggct
tgtaatctgggtcacctgggagtgatggaggaactgctcaggcagggggcgctcttgaac
actccaggctaccagaatgactctccattgcacgacgccgtgagaaacggtcagataccg
gtggtcaagcttttggttgaacgcggcgcttcccaaagtgtcctaaatatgtttggcctg
cggccggtagattatgcgctgactccagaaatgcaggaggtcctaagaacggccccggag
gcacctcatcctgtaacaaccaccccgaacccccccgccagcccgagtgaggctgcgggc
tttgtgcgagagacgggtccagtggttgtgattggcagtcagctgacgcagactcagcag
aagcagctcaccaaagcagctcaactccttggagggaaacaagtgcgctccttttgtaga
gcagtcacccatgtggttgtaccagatgttcccatcatgccctcgtccctgaccgcactt
cggggtgtcctcaacggctgctggatcctcactttcagctgggtgagttgtagccttcag
gcaggcagctgggtcggggagtgtgagtacgaggcaggtgacggccccttgcgtgcccgc
gtgaacagaggcagcctgctccctcccctatttgatggctgcttcttctacatgctgggc
tccttctgcaagccaccaaaactagagctcattcagttagtgaaagaaggtggtggacag
cttctgaatcgccagcccaaacccgacagcgacgtcacacaaaccctgagcgcagcggcc
taccatgcccagcctggttcagaccagattctctgtacccagtatatcttatatgatcct
cagagctcctacaaaccccagaaggtcagagtaggtaaggtctggtcggctccatccaca
tggtttctggaatgcatagctgcctttcaactcctgccagtgccagagcactag
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