Puntigrus tetrazona (Sumatra barb): 122356137
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Entry
122356137 CDS
T08985
Symbol
nfkb2
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p100 subunit
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04010
MAPK signaling pathway
ptet04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122356137 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
122356137 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ptet03000
]
122356137 (nfkb2)
Transcription factors [BR:
ptet03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
122356137 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
SHLD2_C
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
SHLD2_OB1
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
122356137
NCBI-ProteinID:
XP_043110558
LinkDB
All DBs
Position
13:8238414..8256098
Genome browser
AA seq
1699 aa
AA seq
DB search
MTGPISLQSKDRKMAHKPKIYVFLGAPCPQALTEDMQEIAAPPWKTIDLSWSQGRLIPKD
TIKEAQTGDECVEVVNGTIQTAVTSDRVSESTEDKRETSLDDGTPSGQSKAESNEEENLC
PVLVTEYLDSCFCSHSLSRLDEDRWPTPPVSTETEYLSTWTKSQALLLRGRVAQRPTSDF
SDDFLLGSPHTPTKQISSSSTSSPELYSPTVSPEERGLGGTLQSSGEWHNESLSQRQQER
GVILEITADGILCSQGNAMAEKPVDREKVGLDVDSPSSNAQTSPSPTTSKRMRFSQTASK
AKETIKQRARTAAAPLCGPTTLLARCKTHGVRYAILVAVVHPCHLKEVKVKTGASAGTSV
PLATLIVTDQSEVEMKVVLWRTSAFWALTVFPGEILLITDVTMHIDKWKTETVLQSTFNS
RLLNLGQVTRERIPPAPQNLNCHTLRALCTHLCEKRPLLVSLPLKKPQDLHSIPFIRLGA
LRPDTLVHALLRVKHWKLITAWRDEAEGTSRSGGVLKAILNVEQGDGQRCAVILWGAALS
WLQRLERNKDAVWEFRLLLVRQDVTSGLLELHSTPWSSCQPLFPDDNRCKEFYSTVRSQR
TASSFEIDLSTLLSQKYSGDVDLRVKITAFQFQSSPSQEASLVMDGNMPLETILNVVSGD
IVFAGCGQCSAELETDENSIYRPCYPCLPHTGVRRYYRPVVLTVQTGGDQICVQVPPALV
QKILLNTPPDKLHKTIAPASEVRFIQILAVVXXSRRLIKPIREXANITVVQVCLXQKSGV
ASGDPAEHRMAGALRMDDAQYSLKFNNEFMVDLPYLHEPFEVKPEPFVPETVHGPYLQII
EEPKQRGFRFRYECEGPSHGGLPGASSERNRRTYPTVKVSNYMGHARVEVQLVTHTDPPR
VHAHSLVGRHCNDNGICTIDVGPNDLTAQFSNLGILHVTKRGVVDVLLKRLKEEKRRIKE
PGYKCTDSEEQTILQEAKELGKSMDLNIVRLKFTAYLQDSNGSFTRALKPVVSNPIYDSK
SPNASNLKISRMDKTSGSVLGGEEVFLLCDKVQKDDIDIRFYEEEDDGGWEAFGDFSPTD
VHKQYAIVFKTPPYRCTDIPRPVTVFLQLKRKKGGDCSEPKQFTYIPHNQDKEEVQRKRM
KALPQPYDHWRGGPQGGAGAFGGPGSGTGGGGMGGGFQFNPPMDGSGFFIGGCSGFSGGA
HMSGSAPQTDKSQNQSTNTKTQSGSQMQQQLFQIATALQSRATLMAKCSARALLQYCSTG
DVRPLLALQRHLCGVQDENGDTPLHLAIIHQQPVVVQQLIQALNNTPQQKFINKLNNLNQ
APLHLAVITKQVKLVEMLMKTGADPSLLDQEGRTALHLAAHTGDEAILRVILSLMGERHA
HLINSADFSGQYPVHLAVKKDGEHCLRLLVEAGAKINMPEQKSGCTALHLAVRDNLLRLA
CCLITELKADVNACTYGGNSPLHFAASQGSPPLCSMLIAAGADKRMENDEPLFFQSSSSS
DEDDESEKNEVDRELPDLMVQQVHCLSISSERGTLNPRKRPAAGHTPFDLAKCQKVRDLL
DGRKGTKPSSLAPKRTKISTEEVNQGLDSQVLTKLCGILIEDDVPWRELAEKLGMLTLTH
LYQDSASPCQKLLENYQLSGGPVDGLVEALQSLGVSEGVRLLRDSQPREDKQSTDSTEDS
GFGSQSIEEEMGNPAVAHR
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgactggaccaatatcgttgcaatctaaggacaggaaaatggcacacaaaccaaagatt
tatgtttttttgggtgccccatgtccccaagcactcactgaagacatgcaggagatagca
gccccaccctggaagacaatagacctctcttggagtcaaggcaggttgattcccaaggac
accattaaagaagcccaaacaggtgacgagtgtgttgaagtggttaatggtacaatacaa
actgctgttacctctgacagagtttctgagagtacagaggacaaaagagaaacatcactg
gatgatggcactccatcgggtcagtcaaaggcagagtctaatgaagaagagaatttgtgt
ccggtattagtgacagaatacctagatagttgtttctgctcacatagtttgagtagacta
gacgaagatagatggcctacaccgcctgtttccacagagactgagtatctgagtacatgg
acaaaatcccaagccttgcttcttcgaggtagagtggcccaacgtccaacgtctgacttt
tctgatgacttccttcttggttctccacacacccctaccaaacaaatatcctcatcttcc
acaagttccccagaactgtacagtccaacggtcagccctgaagagaggggcttgggggga
accttgcaaagctcaggagagtggcataatgaaagtctaagtcaaagacagcaagagaga
ggagtgattctggaaatcacagcggatggcatcctctgctctcagggtaatgctatggct
gaaaaacctgtggatcgtgagaaagttgggcttgatgttgactcgccatcttcaaatgca
cagacttcacctagtcccactacttcaaaaaggatgaggttttctcagactgcaagtaaa
gctaaagaaacaataaagcagagggcaagaacagctgctgcccccctctgcggccctaca
accctgctggccaggtgtaagacacatggtgtacgatacgccatcttggttgctgtggta
catccatgccacttaaaagaggtcaaagtaaaaactggagcttctgctggaaccagtgta
cccttagcaacactgattgttacagaccaatcagaggtggagatgaaggtggtgctgtgg
aggacatcggctttctgggctttaacagtttttccaggagaaattctgcttattacagat
gtgaccatgcacatagacaagtggaagaccgagaccgtcctgcagtcgaccttcaacagc
aggctgctgaatttgggacaggtcacaagggaacgtattccacctgccccacagaatttg
aactgtcatacgctgagagcgctgtgcactcatctgtgtgaaaagcgccccctgttggtg
tctctgcctcttaagaagcctcaggatttgcactccatccccttcatccgccttggagca
ttacgtcctgacacactggttcatgctctgcttagggttaaacactggaaattaatcaca
gcctggcgtgatgaagcagaggggacatccaggtcaggaggtgtactgaaagctattttg
aatgtggagcaaggagatggtcagcgatgtgctgtcatactttggggagctgctctctct
tggctgcagcgtttagagaggaacaaagatgctgtgtgggaattcagattgctgctagtc
agacaagatgtgacttcaggtttactagagctgcattctactccatggagcagctgtcag
cctctctttcctgatgacaatcgatgcaaggagttttacagcactgtccgctcacagagg
actgctagcagctttgagattgatctcagcacgctcctgtcccagaaatactcgggtgat
gtggatctgagagttaaaatcacggcgttccagttccagagcagtccgtcccaggaggcc
tcgctcgtaatggatggcaacatgcccttggagacgatcttgaatgtagtctctggtgac
atcgtctttgctggatgcggtcagtgctctgcagaactggaaacagatgagaacagcata
tacagaccctgctacccgtgtctgccacacacaggagtgcgccgctactataggccagtt
gttttaactgtgcagactggaggtgatcaaatctgtgtgcaagttcctcctgctctagtg
cagaagatcctcctgaacactcccccagataagctccacaagaccatagccccagcatca
gaggtgaggttcatccagattttagcagtggtttaataaagtcgacgtctaattaagcct
atacgagaataagcaaacatcacggttgtccaagtttgcctctgacagaagtcgggagtc
gcttcgggtgaccctgcggagcacaggatggcaggagcactaaggatggatgatgcacag
tattccctgaagtttaacaatgagtttatggtggaccttccatatctgcatgaacctttt
gaggtgaagcctgaaccctttgtgccagagacagttcatgggccttacctacagataatt
gaggagccaaagcagagaggcttcagatttcgttatgaatgtgagggcccatcccatggt
ggtctgccaggggcctccagtgaaaggaacagaaggacgtatcccacagttaaggtgtca
aactacatgggtcacgctcgcgtagaggttcagcttgtgacgcacacagaccctccacgt
gttcatgcgcatagccttgtgggtcgccattgtaatgacaatgggatatgcaccattgat
gtcgggcctaatgatctcacagcacaatttagtaatttaggcatcctccatgtcactaag
agaggagtagttgatgtattattgaaaaggctgaaagaagaaaagaggaggataaaagag
ccaggatataaatgcactgattcagaagaacagactatcttgcaagaagccaaagaactg
gggaaaagcatggaccttaacattgtgagattaaagttcactgcttacttacaggacagc
aatgggagtttcacaagagctttgaagccagttgtctccaaccccatctatgatagtaaa
tcaccaaatgcttcaaatctgaagatctcccgcatggacaaaacctctggatcagtgctg
ggaggagaagaggtctttctgctctgtgataaagttcaaaaagatgatattgacattcgt
ttttatgaggaggaagatgacggaggatgggaggcatttggagacttctcccctactgat
gtccacaaacagtatgcaatcgtgtttaagaccccaccataccgctgcacagatatccca
cgtcctgtcacagtcttcctgcagctcaagaggaagaagggaggcgactgcagcgaaccc
aagcagttcacgtatattcctcacaatcaagacaaagaagaggttcagaggaagaggatg
aaggcacttcctcagccgtacgatcactggcggggaggacctcagggaggagcaggggca
tttgggggtcctggatctggaacaggaggaggaggaatgggaggaggttttcaatttaat
cctccgatggatggttcagggtttttcattggtggatgtagtggatttagcggcggggca
cacatgtcaggctcggccccacagaccgacaaatctcagaatcaatcgacaaacacaaaa
actcagtctggctctcaaatgcagcagcagctctttcagatcgccacagctctgcagagt
cgtgccactttgatggcaaagtgctctgcgcgtgctttattacagtactgcagcacagga
gatgtgcgccctctgctggctctgcaaagacatctgtgtggagtgcaagatgagaacgga
gacacgcctctgcacttggccattatccatcagcaacctgttgtggtacaacagctcatt
caagccctgaacaacactccacagcagaagtttattaacaaactcaacaacctcaatcag
gctccactgcatctggcagtgatcacaaagcaggtcaagttagttgagatgctgatgaaa
accggtgcagacccgagcctgctggaccaggagggccggacagcgcttcacttggccgct
cacaccggtgacgaggccatactacgagtaatcctgagtctgatgggagagcgccatgcc
catttaataaactctgctgacttttcaggtcaatatccagtccatctcgcagtaaagaag
gatggagagcactgtcttcgattgttggtggaggcaggagcaaagattaacatgccagag
cagaaaagtggctgcaccgcactacacctggcagtgagggacaaccttttaagactggcc
tgttgtctcattaccgagctgaaggctgatgtgaatgcgtgtacctacggcggcaacagt
cctcttcactttgctgccagtcaaggctccccacctctctgctccatgctgatagctgca
ggtgccgataaacgcatggagaacgacgagcctctctttttccagagctcgtcctcctca
gatgaagatgacgagagcgagaagaatgaagtcgacagggagcttccagatctcatggtt
cagcaagttcactgcttgtcgatatcatctgaaagaggaacgcttaacccgcgcaagaga
cctgctgcaggacacacaccgtttgatctggccaaatgccaaaaggttagagatctttta
gatggcaggaaaggcaccaagcccagttcactcgcccccaagaggaccaaaataagcact
gaggaagtgaaccaaggtttggacagccaggtgctcacgaaactgtgtggtattctcatt
gaagacgacgtaccctggagagagttggcggaaaaactgggcatgctcacgctcactcac
ctgtaccaggatagtgcctcaccctgccagaagcttcttgagaactaccagctgagcggg
ggtcctgtggacggcctggtggaggcgctgcagtctctgggagtcagtgaaggagtgaga
ctactgagagacagccagcccagagaggacaagcagagcacagattctacagaggacagt
ggcttcggaagtcagtccattgaagaggagatggggaaccctgcagtggcccatcgctga
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integrated database retrieval system
