Puntigrus tetrazona (Sumatra barb): 122359492
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Entry
122359492 CDS
T08985
Symbol
scarf1
Name
(RefSeq) LOW QUALITY PROTEIN: scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122359492 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ptet04131
]
122359492 (scarf1)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ptet04990
]
122359492 (scarf1)
Membrane trafficking [BR:
ptet04131
]
Endocytosis
Phagocytosis
Scavenger receptors
122359492 (scarf1)
Domain-containing proteins not elsewhere classified [BR:
ptet04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
122359492 (scarf1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
122359492
NCBI-ProteinID:
XP_043115746
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Position
15:complement(15300081..15306315)
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AA seq
894 aa
AA seq
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MDTFLTSFVLMLMCVQCSTQRLSSAGKNVCLSVRDSSLICCSGWGQDGHECTVPLCEGER
ACLQDEVCVYPGLCRCKPGFYGYQCKTPCPPEFWGPDCRELCPCHPHGLCDPVTGECSCL
PNRWGSLCQNSCKCGRHGKCDPVYGNCTCEEGWWTSTCSKACQCHLSTSTCEQATGRCLC
NKGYWGQKCSLQCNCYVSPCHQRTGACQCQHGWWGPSCDRRCICDLSKADCDVQTGICLC
YPGYKEPFCNEPCDSGKYGRGCRRSCGHCEGGRSCSKQDGLCDACAAGWNGTRCDQPCPG
GYYGHRCQDVCPRCRNMEPCDTETGACLQCDPGWTGPSCAKPCTDGTYGDGCRFLCRTCH
HGHCDHVTGSCICLPGFQGESCNSTCPANLYGINCSSSCDCGNHACHPATGACPNSSRAG
LLAGLLVPFCILILALLFCCCCCGRPVEGKERVAVGDGSPAVRMKHHVYTVLANMGSAMP
CITLWSSGLPRVTVSHHDPELTFNHSFIEQPSSGWVTDSFETDDEGEAVYCEPPREDVLT
VAGGELQELNSKCNFFPDPSTFSSEDMSQDFGIPRTSSIAKSKRPSVSFAEGTKFSPKER
RSSTQDLPGTSRKPKAWGVLMISALQGGQGNHSETEIEKEEKNKEETISSEEQAAASETT
QTDSERYSSGPLRTYLTVPSGRRRTLSNTRKNVQPSDSGQDADSEKLTTVYVTVGKTQKI
AKQEPPXEGPVQAMLRRLGSLQRQREEAAQPKGKGQAIAKPPRRKLGARASAWEQATGSN
QSEVVMRKPSRRKHNSLSSPCTVGATDFPQENCTPKRPLSSILKSVPESDTLHSLEVEQD
TEAVYETDTLTEHTYETVAPSDGVSTSSEIIINETVVDQAENDPNYENVYVKHS
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggacacctttctgacctcatttgtactgatgctcatgtgtgtccaatgctcaactcag
agactctcttcggccggaaaaaatgtctgcctcagtgtcagggattcttctctcatctgt
tgttctggatggggccaggacggtcatgaatgcaccgtccccctctgtgagggagaaagg
gcctgtctgcaggatgaagtgtgtgtttatcctggactctgtcgatgtaaacctggattt
tacgggtaccagtgcaaaaccccttgtcctcctgaattttgggggccggattgtcgagag
ctctgtccctgtcaccctcatgggctctgtgacccagtcactggtgagtgctcatgcctg
cccaaccgctggggcagcctgtgccaaaacagctgcaaatgtggacgtcatgggaaatgt
gaccccgtctatggcaactgtacttgcgaggagggttggtggacgtccacttgctccaaa
gcctgtcagtgccacctttccacatccacttgtgaacaagccacgggacgctgcctgtgt
aacaaaggttactggggccaaaagtgcagcctgcaatgcaactgctatgtgtccccctgc
catcagcgcacaggggcctgtcagtgccagcatggctggtggggtccgtcctgtgatcgc
cgttgcatttgtgatctcagcaaagcagactgtgacgtgcaaactggcatctgtctgtgc
tacccaggttacaaagagcctttttgcaatgagccttgtgacagtggaaaatatggcaga
ggctgtaggagaagttgtggacactgtgaaggaggcaggtcttgctccaaacaggacggc
ctgtgtgatgcctgtgcagcagggtggaatggcactcgctgtgaccagccgtgtcctgga
ggttattatggccaccgctgccaagatgtttgtccacgttgcagaaacatggagccatgt
gacacagaaacaggagcgtgcttacaatgtgatcccggttggactggaccgagctgcgcc
aaaccctgcacagatggtacatacggagatggatgtcgtttcctgtgtagaacctgccat
catggtcactgtgaccatgtgacaggaagttgcatttgtcttcctggcttccagggtgag
agctgtaacagcacatgtcccgctaacctgtatggcatcaactgctcctcctcatgtgac
tgtgggaaccatgcatgccatccagccacgggagcttgtccaaacagtagcagggcagga
ctcttagcagggcttttggtacccttttgcattttaatactcgccttgttattctgctgt
tgctgttgtgggagacccgtcgaagggaaggaacgagtggcggttggagatggcagccct
gcggttcgcatgaagcatcacgtttatactgtgctggccaacatgggttcagcaatgccg
tgcattactctttggtcatctggtttgcctagggttacagtatctcatcatgatcctgag
ctcacatttaaccacagcttcattgagcagccatcgtcaggctgggtgactgattcattt
gaaactgacgatgaaggagaggccgtctactgtgaaccacccagggaagatgttcttact
gtggctggtggagagcttcaagagctaaactctaagtgtaacttcttccctgacccatca
accttcagcagtgaagacatgtcacaggatttcggtatccctcgcacctccagcattgcc
aaatccaagcgtccttcagtctctttcgcagagggcacaaagttcagtcctaaagaacgc
cggagttcaactcaagacctaccaggaacaagtcggaaacccaaggcctggggcgtactg
atgatctctgccctgcaaggaggacagggaaaccacagtgaaacagaaatagaaaaagaa
gagaaaaacaaggaggagaccatctcctctgaggagcaagcagctgcatctgaaacaaca
caaactgactcggagagatacagttctggcccgctaaggacttacctcactgtgcccagt
gggagacgacgtacactttccaataccaggaagaatgtccagccgtctgatagcggccag
gatgcagattcagagaagctaacgactgtatatgtaactgtgggtaagacccaaaagata
gccaagcaagagccccctncggaagggcctgttcaggcgatgctgcgcaggttgggcagc
ctacagagacaaagagaggaggctgcccagcccaaaggaaaggggcaggcgatcgccaag
ccaccacggaggaaactgggagcacgggccagtgcatgggagcaagctactgggtcaaac
caatctgaggtggtcatgaggaaacccagccggaggaaacacaactcactcagctccccc
tgcacagtgggggcaacagactttcctcaggagaactgcacccccaagaggccattgtcc
tccattttaaaaagtgttccagagagcgatacgctccatagtttggaggtggagcaagat
actgaggcagtgtacgagactgacactctgacagagcacacgtatgagactgtggctccg
tctgatggggtctccacatcttcagagattattattaatgagacagttgtggaccaagca
gaaaatgacccaaattatgagaatgtttatgtaaagcattcataa
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