Puntigrus tetrazona (Sumatra barb): 122362100
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Entry
122362100 CDS
T08985
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122362100 (scaf8)
03041 Spliceosome [BR:
ptet03041
]
122362100 (scaf8)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122362100 (scaf8)
Spliceosome [BR:
ptet03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122362100 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122362100
NCBI-ProteinID:
XP_043119316
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All DBs
Position
17:complement(20127349..20157879)
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AA seq
1287 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKALKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIITTFQNLYRCPADDKSKIVRVLNLWQKN
NVFKSDIIQPLLDMAAGLPPPSVTPVSASSAVPINSTTPGTPATPATPANIVQSLPDWAS
QISNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGNESEHSEDSKKDATSSQLPVVPESINSSIF
HQLAEHLQQQNLEQFQKQLMEHQQHQQKAHKTSMNMEGQDAIFGTENSAPPGQSSAPPQL
PEQEAKMDDSIDNQQQDMDIDEGQDTVDEELFEAEEKKTSSTRSRTRSRSRSRSPKRRRS
RSRSGSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSRVLSVCS
TTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRALQKLSTGS
YKIGSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGMIDQETVN
NEWESQRNTETAKETQSQAVTAETSTASSASSEAFTQPVTMMPMQIPVAQTVPAVGLVPP
SFPVTMAMPPPGFGPPPPFLRAGFNASQPPPGFMATPGVGPSAVGTSLASAQTSLVQPSL
QTTQENSKDSPFGAMIPPTSTIPGSFIPSAMPGAGVFNPVGAQHQQSSTDKTPQSAETME
AASEITLQGMQNAVRSGMGLLGMHPSASLTHPLSGQRMAGLLPLELRPNLLQGPGGRFPL
LMQPGLAHQTNSVLDVSLQAQARVRVPFSQMEQFNRAEGSFARAPNPSSAGAESLAKTDN
ETPPRSDVGAQQEGDQDYRFPPPEKQSTGLLKTPPLEMRTEPVPVRPPLLERPPRTVLQA
DGREGRRENMSGGFRAESRWGPPRGDFDERDMRGMSGGPPKGFQEDRSNPNFQNRFEGRS
GGSSGPAWNRATGPSFNANMHQDYDDRRRPWERQKDRDDRDMDFRGEMNGNRHSRERDRE
RERERDRNRDRERGRERNRERERERERDRERENEKDKERWTPLSSQSQPQPLLPKSQPLL
PLPTPLVAQPQAQEQAQMKSPQHPPHPEPQPTERDAEPQPEVPPESRPKSLSPPEETADS
QEQESISCVNGMEADSKPASQSAAEPSRSPSPSLTSTPTCFQSEPLKGEKTPEMSVSSSV
DTDTEQTGPKVNAETEPELEKTDTEET
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaggcgtttaacggcgagctgtactcactgaatgaatacaagccaccg
atctccaaagcaaagatgacccagattacaaaatcagccattaaagctttaaagttctac
aaacatgtcgtccaaagtgtggagaaattcatccaaaagtgcaagcctgaatacaaagtc
cccggtctgtacgtcatcgattccattgtacggcagtctcgtcaccagtttggtcaagag
aaagacgttttcgctccacgcttcagtaagaacatcattaccacgtttcagaacctctac
cgctgcccagccgatgacaagagtaagattgtccgagtactaaatctatggcagaaaaac
aatgtcttcaagagtgacatcatccagcctcttctggatatggcagcagggctcccaccc
cccagcgttacgcccgtctctgccagcagtgccgtgcccatcaatagcactactcccgga
actccagcaactcctgccaccccagccaacatagtgcagagcctcccagactgggcgtct
cagatctccaacacagacacagtggctgcagttgcccagattttacagagtccccagggc
cagcagttacagcagctggttcagagcctccagatgcagcagcagaaacctcagccctct
ctactacaggcgctggatgcaggtttggtggtgcagcttcaggccctgactgcgcagctt
actgcagccgccgcagccaacacgctcaacccgctggagcagagagtttcctcctttaac
aagaagctgttgggtcagtttgattttgggaatgagtcggaacacagcgaggattctaag
aaagatgctacatcatctcagttacctgtggtgcccgagtccatcaatagctcaatattt
catcagctggctgagcatcttcagcagcaaaacctcgagcagtttcagaagcagctaatg
gagcaccagcagcatcaacagaaggcacataaaacttctatgaacatggagggccaggat
gccatctttggtactgaaaattcagctcctcctggccagagcagcgccccgccacagctc
ccagaacaagaagcaaaaatggatgactccattgataaccagcaacaggacatggatatt
gatgagggacaggatactgtagatgaggagctctttgaggctgaggaaaagaaaaccagc
agcacccgttcaaggacacgttcgagatctcggtccaggtcacctaagagaaggaggtca
aggtctcgctcggggtctcgaaagcgcaaacacaggaagagatcgaggtctcgctcaagg
gacagaaagaggaagtcctcacgttcttattctagtgaacgacgagcacgggaaagagaa
aaggagcggcagaaaaaaggacttcctccaatccgctcaagggttctaagtgtttgcagc
actactctatgggtgggccaagtggacaagaaagccacccaacaagatcttactaacctc
tttgaagagtttggccagattgagtctatcaatatgattcctcccagaggctgtgcttac
atctgtatggttcatcgtcaggatgcataccgtgctcttcaaaaactgagcacaggctcc
tacaaaatcggttcaaaggtcatcaaaattgcttgggcccttaataaaggggtgaaacag
gagtataagcagttctgggatgtggacctcggggtgacttatatcccatgggagaaggta
aaactggatgatctggatgactttgcagagggaggcatgattgaccaggagactgttaac
aatgaatgggaatcacagagaaatactgagactgccaaagagactcagagccaggctgtc
acagctgaaaccagtacagcaagcagcgcatccagtgaggcctttacccagcctgtcact
atgatgcccatgcagattccagtcgcacagacggtccctgctgttggccttgtgcctcca
tctttccctgtcaccatggcaatgcccccacccggctttggtcccccaccaccatttcta
agggctgggtttaatgcctcacagcctcctccaggtttcatggccacgccaggagtagga
ccgtctgcagttggaaccagtcttgcttcagctcagacctctctagtgcagccttcattg
caaaccactcaagagaacagcaaggattctccgtttggagccatgattcctcccaccagt
actattcctgggagttttattccatcagcaatgcccggggcaggagtctttaaccctgtg
ggagcacagcatcagcagagcagcacagacaaaacgccccagtctgcagaaacgatggag
gcagcttctgaaataacactacagggaatgcaaaacgcagtacgcagtggaatgggtctc
ctcggcatgcacccatctgcgtctctaacacatcctctctctggccagaggatggcaggg
ctgcttcctctggaactgcgacccaacctgctccagggacctgggggccgctttcccctg
ctcatgcagccaggccttgcacatcagaccaacagtgtcctggatgtttcactccaagcc
caagctcgcgttcgggttccattttctcaaatggagcagttcaaccgtgctgaaggctct
tttgcaagggcacctaacccttcgtctgctggagctgagagtctggccaagactgataat
gaaacaccacccaggtcagatgtaggtgcccaacaagaaggagatcaggactatcgcttt
ccaccaccagagaagcagagcacggggttgttaaagacgcctcctttggagatgcgtaca
gagcctgtgccagtcagaccacctttactagaacggcctccgagaacggtcttgcaagcc
gacggtcgagaaggaagacgagaaaatatgtctggcggtttcagagcagaaagtcgctgg
ggaccacccaggggggactttgatgagcgagacatgagggggatgtctggtggacctccg
aagggtttccaggaggatcgttccaacccgaactttcagaatcgtttcgagggccgcagc
ggaggttcatcgggacctgcttggaatcgagcaactgggccttcttttaacgccaacatg
caccaggactacgatgatcgtcgcaggccttgggaaaggcagaaggaccgcgatgatagg
gacatggacttccggggcgaaatgaatggcaatcgtcatagccgggagcgagaccgagaa
cgtgaaagggagcgagacaggaatcgggaccgagaacgcggcagagagcggaatcgcgag
agagaacgggagcgggaaagggacagagagcgggagaacgagaaggacaaagagcgctgg
acacctctttcttcacaatctcagccccaaccactgctccccaaatcgcagccgctgctc
cctctgccgaccccattggtcgctcagcctcaagcacaagaacaagcgcaaatgaagtcg
ccccaacacccccctcatccggaaccgcaacctacagaaagagatgctgaaccacaacca
gaggtaccgccagagtcacggcccaagtcactcagcccccctgaagagacagcagacagt
caagagcaggagagtatatcatgtgtcaatggaatggaggccgattcaaaacctgcgtcc
cagagcgctgcagagccctctcgcagcccctctccatccctcacctccacacccacctgc
ttccagagcgagcccttgaaaggagagaagaccccagaaatgtctgtttcttcctctgtg
gatacagacactgaacagactgggccaaaggtgaacgctgagactgaacctgagctagag
aaaacagacactgaggaaacataa
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