Panthera tigris altaica (Amur tiger): 102958578
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Entry
102958578 CDS
T02988
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ptg
Panthera tigris altaica (Amur tiger)
Pathway
ptg03030
DNA replication
ptg03410
Base excision repair
ptg03420
Nucleotide excision repair
ptg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102958578 (LIG1)
03410 Base excision repair
102958578 (LIG1)
03420 Nucleotide excision repair
102958578 (LIG1)
03430 Mismatch repair
102958578 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptg03032
]
102958578 (LIG1)
03400 DNA repair and recombination proteins [BR:
ptg03400
]
102958578 (LIG1)
Enzymes [BR:
ptg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102958578 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102958578 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102958578 (LIG1)
DNA replication proteins [BR:
ptg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102958578 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102958578 (LIG1)
DNA repair and recombination proteins [BR:
ptg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102958578 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102958578 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102958578 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PucR
Motif
Other DBs
NCBI-GeneID:
102958578
NCBI-ProteinID:
XP_015395147
LinkDB
All DBs
Position
Un
AA seq
934 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKETSSREIEPPPKVALKERNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPEGSPPLSNTSPAGLSPTGIPKRR
TARKQLPKRPIQDILEEQNEDEDREAKRKKEEAETPTESLTEPELAQKEEAEGDRPTTPA
EHLETSPAEPPTDSTSEPEVAGKQEAREGDQAKPPPRAPKTVSSFFAPRKPATKKEGKEE
GPGTPRKEEAKGPLDPPGYNPAKNNYHPVDDACWKPGQKVPYLAVARTFEKIEEVSARLR
MVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGKQGV
WWPLEHTHWPAWPQSTAKKIDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALA
QAVSLTPPRPGEAPRLSPPGCRSSGRTPAHSCPRPSEVPDLDRIIPVLLEHGLEHLPEHC
RLSPGVPLKPMLAHPTRGVSEILKRFEEAAFTCEYKYDGQRAQVGGWTRSLGRRESAREP
GRAADFHLHVEAFFCVAAVVYARTEVLHYDRERPFVSLRLPFGLAPTSQQPGVSPSTFQI
KLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAADIQVQVCLYAFDLIYLNGE
SLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTLD
IDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEESE
ELQAICKVPGGWREVDSTQRGGGLNQEALVASLYPRPSLPPTRCCSPQALVLPTPRSYVR
ADGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPE
EATTSAQVASLFKKQSQIQNQQGADLDSDPEDFY
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaggagggcaaagcgaaaaagccg
gagaaagagacctccagcagagagatagagccacctccaaaggtggcgctgaaggaacgg
aacggagaggtgcctgagaacgattctccggtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggacgaagccctcacgccctccaaaggccagaag
ccggccccaggctctccacaggtctcccctcccagccctgtcacatttcccgagggcagc
cctcccctctccaacacctctcctgcgggcctctccccaacggggatcccgaagcggcgc
acagctcggaagcagcttcctaaacggccgattcaggatatcctggaagaacagaacgag
gatgaggacagagaggcaaagaggaagaaggaagaagcagagaccccaacagaaagcctc
acagagcctgaattggcccaaaaggaggaagcagaaggggaccggcccacgacgcccgct
gagcacttagagacctccccagccgagcccccgacagacagcacctcagagcctgaggtg
gccggaaagcaggaagcacgggagggggaccaggctaagcctccccccagagctcccaag
acggtcagcagtttcttcgccccccggaagccggcgaccaagaaagaagggaaagaagag
ggacctggcacccctagaaaggaggaggccaaaggacccctggacccccccggctacaat
ccggccaagaacaactaccatcccgttgacgacgcctgctggaagccgggccagaaggtc
ccttacctggctgtggcccggacatttgagaagattgaggaggtttctgctcggctccgg
atggtggagacactgagcaacttgctgcgctccgtggtggccctgtcccccccagacctg
ctccccatcctctacctcagcctcaaccgcctcgggccgccccagcagggcctggagctt
ggcgtcggggacggtgtcctcctcaaggcggtggcccaggccacgggtaagcagggcgtg
tggtggcctttggagcacacccactggcctgcctggcctcagtccacagccaagaagatc
gacgtcatcaaaggcctctttgtcgcctgccgtcactcagaagcccgattcatcgccaga
gccctgagcggacggctacgcctcgggctggcagagcagtcggtgctggccgccctcgcc
caggccgtgagcctcacgcccccccgcccaggtgaggccccgcggctgtctccgcctggc
tgccggagttctggaaggacacctgctcattcttgcccccgccccagcgaggtgcccgac
ctggaccggatcatccctgtgctgctggagcacggcctggagcacctcccggagcactgc
aggctgagcccaggggtccccctgaaaccgatgctggcacaccccacccgcggtgtcagc
gagatcctgaaacgctttgaggaggcggctttcacctgcgagtacaaatacgacgggcag
agggcacaggtaggggggtggacgcgttccctcggcagaagggaaagtgccagagagccg
ggtcgtgccgcagacttccaccttcacgtagaggcctttttctgcgtggcggccgtcgta
tacgcccgcacggaggttcttcactacgacagggaaaggccatttgtgtccctgcgtctg
ccttttggcctcgcccccacctctcagcagcccggggtctccccctccacctttcagatt
aaactgccgtcagtcacatccttcatcctggacacggaagccgtggcttgggaccgggaa
aagaagcagatccagccgttccaagtgctcaccacccgcaaacgcaaggaggtggacgca
gcagacatccaggtccaggtttgtctgtatgccttcgacctcatctacctcaatggagag
tccctggtgcgcgagcccctttcccggcgccgacagctgctccgggagaacttcgtgcag
acggagggcgagttcgtcttcgccacctctctggacaccaaggacacagaccagatcgcc
gagttcttggagcagtccgtgaaagactcctgcgaggggctgatggtaaagaccctggac
atcgatgccacctacgagatcgccaagagatcacacaactggctcaagctgaagaaggac
tacctcgatggcgtgggcgacaccctggacctcgtggtgatcggcgcctacctgggccgt
gggaagcgggccggccgctacgggggtttcctgctggcggcctacgacgaggagagtgag
gagctccaggccatatgcaaggtgccaggaggctggagggaagtcgattcgactcaacgt
ggtgggggcctgaaccaagaggctctcgtggcctctctgtatccaagaccctctcttcct
cccacccgctgctgttccccacaggccctggtgctgcccaccccacgctcctacgtccgg
gccgacggcgccgtggcccctgatcactggctggaccccagcgccgtgtgggaggtgaaa
tgcgccgatctgtccctgtcccccatctaccccgctgcccggggcctggtggatagcgag
aaggggatctccctccgtttcccccggtttattcgcgtccgcgaagacaagaagcccgag
gaggctaccaccagtgcccaggtggcctctctgtttaagaagcagagtcagattcagaac
cagcagggcgcggacttagactccgacccggaagatttctactag
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integrated database retrieval system
