Phaeodactylum tricornutum: PHATRDRAFT_35680
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Entry
PHATRDRAFT_35680 CDS
T01075
Symbol
RNAP-II_3
Name
(RefSeq) hypothetical protein
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03020
RNA polymerase
pti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PHATRDRAFT_35680 (RNAP-II_3)
09124 Replication and repair
03420 Nucleotide excision repair
PHATRDRAFT_35680 (RNAP-II_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_35680 (RNAP-II_3)
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_35680 (RNAP-II_3)
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_35680 (RNAP-II_3)
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
PHATRDRAFT_35680 (RNAP-II_3)
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHATRDRAFT_35680 (RNAP-II_3)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PHATRDRAFT_35680 (RNAP-II_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
7200966
NCBI-ProteinID:
XP_002180062
JGI:
35680
UniProt:
B7FYY8
LinkDB
All DBs
Position
8:509177..509722
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AA seq
181 aa
AA seq
DB search
MFYVKTLDHEIVLEPVHFGPKLKATIVRLLKEHVEGLALANYGYVVNVIEVPEDQIRSGI
IEYDTGNVVFTVKYTALLLRPFLNEVLDAVVTQCNALGFFAFCGPLRIFVSKHSMPEDMF
HGFNHEQDAWVSDDKEVVIAAGSGVRLKIKGRTVEQGNITAIGTIKDNYLGLVDDGEVQG
D
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgttttacgtgaaaacactcgatcacgagattgtgttggaacccgtgcatttcggtccc
aagctgaaagcgacgattgtccgtttgctcaaagagcacgtggagggcttggcgttggcc
aactacggctacgtcgtgaacgtcattgaagttccggaagaccaaattcgctccggcatt
atcgagtacgacacgggcaatgtggtctttacggtcaagtacacggcgctgctgttgcgg
ccgtttctgaacgaagtactggacgcggtcgtgacccagtgcaacgcgctcggcttcttt
gccttttgtggaccgctgcgtattttcgtgtcgaagcattccatgcccgaagacatgttc
cacggattcaatcacgaacaagatgcctgggtttcggacgataaggaagtcgtgattgcg
gccgggagcggggtccggctaaaaatcaaaggccgaacggtggaacaagggaatattacg
gcaatcgggaccattaaggacaattacttgggattggtggacgatggtgaagtacaaggc
gattag
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integrated database retrieval system