KEGG   Phaeodactylum tricornutum: PHATRDRAFT_35680
Entry
PHATRDRAFT_35680  CDS       T01075                                 
Symbol
RNAP-II_3
Name
(RefSeq) hypothetical protein
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03020  RNA polymerase
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHATRDRAFT_35680 (RNAP-II_3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHATRDRAFT_35680 (RNAP-II_3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATRDRAFT_35680 (RNAP-II_3)
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_35680 (RNAP-II_3)
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATRDRAFT_35680 (RNAP-II_3)
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PHATRDRAFT_35680 (RNAP-II_3)
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHATRDRAFT_35680 (RNAP-II_3)
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PHATRDRAFT_35680 (RNAP-II_3)
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 7200966
NCBI-ProteinID: XP_002180062
JGI: 35680
UniProt: B7FYY8
LinkDB
Position
8:509177..509722
AA seq 181 aa
MFYVKTLDHEIVLEPVHFGPKLKATIVRLLKEHVEGLALANYGYVVNVIEVPEDQIRSGI
IEYDTGNVVFTVKYTALLLRPFLNEVLDAVVTQCNALGFFAFCGPLRIFVSKHSMPEDMF
HGFNHEQDAWVSDDKEVVIAAGSGVRLKIKGRTVEQGNITAIGTIKDNYLGLVDDGEVQG
D
NT seq 546 nt   +upstreamnt  +downstreamnt
atgttttacgtgaaaacactcgatcacgagattgtgttggaacccgtgcatttcggtccc
aagctgaaagcgacgattgtccgtttgctcaaagagcacgtggagggcttggcgttggcc
aactacggctacgtcgtgaacgtcattgaagttccggaagaccaaattcgctccggcatt
atcgagtacgacacgggcaatgtggtctttacggtcaagtacacggcgctgctgttgcgg
ccgtttctgaacgaagtactggacgcggtcgtgacccagtgcaacgcgctcggcttcttt
gccttttgtggaccgctgcgtattttcgtgtcgaagcattccatgcccgaagacatgttc
cacggattcaatcacgaacaagatgcctgggtttcggacgataaggaagtcgtgattgcg
gccgggagcggggtccggctaaaaatcaaaggccgaacggtggaacaagggaatattacg
gcaatcgggaccattaaggacaattacttgggattggtggacgatggtgaagtacaaggc
gattag

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