Parageobacillus thermoglucosidasius DSM 2542: AOT13_09275
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Entry
AOT13_09275 CDS
T04476
Symbol
polC
Name
(GenBank) DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03030
DNA replication
ptl03430
Mismatch repair
ptl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOT13_09275 (polC)
03430 Mismatch repair
AOT13_09275 (polC)
03440 Homologous recombination
AOT13_09275 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptl03032
]
AOT13_09275 (polC)
03400 DNA repair and recombination proteins [BR:
ptl03400
]
AOT13_09275 (polC)
Enzymes [BR:
ptl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AOT13_09275 (polC)
DNA replication proteins [BR:
ptl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AOT13_09275 (polC)
DNA repair and recombination proteins [BR:
ptl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AOT13_09275 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
DEDDh_C
RNase_H_2
DUF1409
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ALF10188
LinkDB
All DBs
Position
1856397..1860707
Genome browser
AA seq
1436 aa
AA seq
DB search
MLTNEQKERFQVLLQQLELTSDELVPYFAEAGIQKLVIEKEKKCWHFYFLLPKILPYRIY
QLFTQKLVHAFHHIANVKYTIQAIDTHFTESDIHDYWTHCLQELQEGASPLLSLLHEQVP
SVKGNKLYVIARNEAEAMAVKRRFAKKIAEAYQSFGFPPLQLETEVKQSEEDFAQFLAQK
QQEDAERALAALTEMTAKETKDEPAAEEPAGPLIIGYPIKEDEEVRTLDSIVEEERRVVV
QGYVFDAEAKELKSGRTLLTLKITDYTNSILVKMFSRDKEDAELMAGVKKGMWVKVRGSV
QNDTFVRDLVLIANDINEVKAKERQDTAPEGEKRVELHLHTQMSQMDAVTSVTKLIEQAK
KWGHPAIAVTDHAVVQAFPEAYSAAKKYGMKVLYGVEANIVDDGVPIAYNEAHRLLAEDT
YVVFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFTSFANPHHPLSMTTIELTGITDDML
RDAPDVEEVLRQFYDWIGDSVLVAHNASFDIGFLNVGFAKIGLGKVTNPVIDTLELARFL
YPDLKNHRLNTLCKKFDIELTQHHRAIYDAEATGYLLMRMLKDAQERGILYHDELNKRSK
EEVSYQRSRPFHVTLLAQNDIGLKNLFKLVSLSHVKYFYRVPRIPRSVLQQHREGILVGS
GCDKGEVFDNMIQKAPEEVEEIAQFYDFLEVHPPEVYKPLIDMDYVKDENMIKEIIRKIV
MLGEKLNIPVVATGNVHYLNREDKIYRKILIHSQGGANPLNRYELPDVYFRTTDEMLECF
SFLGEEKAKEIVVTNPQKIASLIDEVKPIKDKLYTPRIEGAEEEIREMSYRRAKEIYGDP
LPEIVEQRLEKELKSIIGHGFAVIYLISHKLVKKSLDDGYLVGSRGSVGSSFVATMTEIT
EVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPKCGTKYKKDGHDIPFETFLGFKG
DKVPDIDLNFSGEYQPRAHNYTKVLFGEDNVYRAGTIGTVADKTAYGFVKGYASDLNLQL
RSAEIDRLAAGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDTSSEWRTTHFDFH
SIHDNLLKLDILGHDDPTVIRMLQDLSGIDPKTIPTDDPEVMKIFSSTESLGVTPEQIMC
NVGTLGIPEFGTRFVRQMLEETRPKTFSELVQISGLSHGTDVWLGNAQELIQNGTCTLSE
VIGCRDDIMVYLIYRGLEPSLAFKIMESVRKGKGLTPEFEEEMRKHNVPEWYIESCKKIK
YMFPKAHATAYVLMAVRIAYFKVHYPLLYYATYFTVRAEDFDLDAMIQGSAAIRKRIEEI
NAKGLNATAKEKSLLTVLEVALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPG
LGTNVALNIVRAREEGEFLSKEDLQQRGKLSKTLIEYLESRGCLDSLPDHNQLSLF
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgttaacgaacgagcaaaaagagcgatttcaagtattgttgcagcagcttgaattgacg
tcagacgaattagtcccgtatttcgcggaagctggcattcaaaaacttgtcattgaaaaa
gaaaaaaaatgttggcatttttattttctgctaccgaaaattttgccttaccgcatttat
cagctgtttacgcaaaagcttgttcatgcgtttcatcatatcgcaaacgtgaaatatacc
attcaagcaatcgatacgcattttacggaatcagatatccacgattattggacgcactgt
ttgcaagagctgcaagaaggtgcttctccgcttttatcattgctccatgagcaagttcca
agcgtaaaaggaaataaactgtatgtcatcgcccgcaatgaggcagaagcaatggcggtg
aagcggcgttttgccaaaaaaatcgcggaagcatatcagtcattcgggttcccgcctttg
cagctggaaacggaagtcaaacagtcggaagaagattttgcgcaatttttagcgcaaaag
cagcaagaagatgctgagcgcgctttagcggcgttaacggagatgacggcgaaagaaacg
aaagacgagccggcggcagaggagccggcaggaccgctcatcatcggctatccgattaaa
gaggatgaggaagtccgcacgctggacagcattgttgaagaagaacggcgcgtcgtcgtg
caaggatatgtgtttgatgccgaagcaaaagaattgaaaagcgggcggacattattaaca
ttaaagattactgattacacaaactcgattttagtgaaaatgttttcgcgtgataaagag
gatgccgagctgatggcgggtgtaaaaaaagggatgtgggtgaaagtacgaggaagcgtg
caaaacgacacatttgtccgcgaccttgtgctcatcgccaatgatattaatgaggtgaaa
gcgaaagaacggcaagataccgctccagaaggggaaaaacgggtggagcttcatctgcat
acacagatgagccaaatggatgcagtcacatccgtcaccaagctcattgaacaggcgaaa
aagtggggccacccggcgattgctgttaccgaccatgctgtcgtgcaggcgtttccggaa
gcctacagcgccgcaaaaaaatacgggatgaaagtattgtacggcgtagaagcaaacatt
gtcgatgacggtgtgccgatcgcctacaacgaagcgcatcgtttgcttgctgaagacaca
tacgtcgtttttgacgtggagacgaccgggctgtcggcggtgtataatacgattattgag
cttgccgcagtgaaagtaaaggacggggaaattattgaccggtttacatcgtttgccaac
ccgcatcatccgttatcgatgacaacgatcgagctgacagggattaccgatgacatgctg
agagacgccccagatgtggaagaagtgctgcgccagttttacgattggattggcgacagc
gtccttgtcgcgcataacgctagttttgacatcggttttttaaatgtcggttttgcgaaa
attggccttggcaaagtgacgaatccggtcatcgatacgcttgaattggcgcggttttta
tatccggatttgaaaaaccaccgcttaaacacgctttgtaaaaagtttgacattgagttg
acacaacatcaccgggcgatttacgatgcggaagcaactggatatttgctgatgcggatg
ttaaaagacgcgcaagagcgaggaattttgtatcacgatgaattaaacaaacgttcgaag
gaagaagtgtcgtaccagcgctcccgtccgttccatgtgacgctgcttgcgcaaaatgac
atagggctaaaaaatttgttcaaactcgtttctttatcgcacgtgaaatatttttaccgg
gttccgcgcattccccgatcggtgctgcagcagcaccgcgaaggcattttagtcggttcc
ggctgcgataaaggcgaagtgtttgacaatatgattcaaaaagcaccggaagaagtcgag
gaaatcgcgcaattttacgattttctcgaagtgcatccgccagaagtatacaaaccgttg
attgacatggattacgtcaaagatgaaaacatgatcaaggaaattatccgcaagatcgtc
atgctcggggaaaaattaaacattcctgtcgttgcgaccggaaatgttcattatttaaat
cgagaagataaaatttaccggaaaattttaattcattcccaaggcggggccaatccgctc
aaccgctatgagcttccggacgtctattttcggacgaccgacgaaatgcttgaatgtttc
tcctttttaggagaagaaaaagcaaaagaaatcgtcgtgacgaatccgcaaaaaatcgct
agtctcatcgatgaagtgaagccgatcaaagacaagctgtatacgccgcgcatcgaaggg
gcggaagaggaaatccgcgaaatgagttaccgccgcgccaaagaaatttatggcgatccg
cttccagaaattgtcgaacagcgtttggaaaaagagttaaaaagcattatcggacacggt
tttgccgtcatttacttaatctcgcacaagctcgttaaaaagtcgctcgatgacggctat
cttgtcggttcgcgcggctcggtcggttcttcctttgtcgcgacgatgacggaaattacc
gaggttaacccgctgccgccgcactatgtctgcccgaactgcaagcactcagaatttttc
aatgacggttcggtcggttccggatttgacttgccggataaaaattgcccaaaatgcggc
accaaatataaaaaggatgggcacgatattccgtttgaaacattccttggctttaaagga
gataaagttccagatatcgatttaaacttctccggcgaatatcagccgcgcgcccataac
tatacgaaagtattgttcggggaagataacgtataccgcgcgggaacgatcggcactgtc
gccgataaaacggcgtacggttttgtcaaagggtatgcaagcgatttgaatttgcagctg
cgcagcgcggaaatcgaccgccttgccgcgggatgcaccggagttaagcggacgacaggg
cagcatccaggcggcatcatcgtcgttccggattatatggacatttacgattttacgccg
attcaatatccggcagacgatacgagttccgaatggcgcacgacgcactttgatttccat
tcgattcatgacaatctcttgaagctcgatattcttgggcatgacgatccgacggtcatc
cgcatgctccaagatttaagcggcatcgatccaaaaacgattccaacagacgatccggaa
gtgatgaaaattttcagcagcaccgaatcgcttggcgtcacgccggaacaaattatgtgc
aatgtcggcacactcggcattcctgagttcggcacgcgctttgtccgtcagatgctggag
gaaacaaggccgaaaaccttttccgagcttgtgcaaatttccggactttcccacggaacg
gacgtctggcttggaaacgcccaagaattgattcaaaacggcacatgcacgctgtcggaa
gtgatcggctgtcgcgatgatattatggtttatttgatttaccgcgggctcgagccgtcg
cttgcctttaaaattatggaatcagtgcggaaaggaaaagggctgacgccggaattcgaa
gaagagatgcgcaagcataatgtgccggaatggtatattgaatcatgcaaaaagattaaa
tatatgttcccgaaagcgcacgctaccgcgtacgtgttaatggcggtccgcatcgcttac
tttaaagtgcattatccgcttttgtactatgccacttactttacagtgcgcgcagaagac
tttgatctggatgcgatgattcaaggctctgcggcgattcgcaaacgcattgaagaaatt
aatgcgaaaggattaaacgcgacggcaaaagaaaaaagcttgttgacggtattagaagtc
gctttagaaatgtgcgaacgcggcttctcgtttaaaaacattgatctttaccgctctcag
gcgactgaatttgtcattgacggcaattcgcttattccgccgtttaatgcgatcccgggc
cttgggacgaacgtggcgctcaatatcgtgcgcgcccgcgaagaaggagaatttttgtcc
aaagaagatttgcagcagcgcggaaaactgtcaaaaacgctcatcgaatatcttgaaagc
cgcggctgcctcgattcgctgccagatcataaccagctttccttattttaa
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