Paramecium tetraurelia: GSPATT00012654001
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Entry
GSPATT00012654001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00012654001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptm03041
]
GSPATT00012654001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSPATT00012654001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
Step II factors
GSPATT00012654001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
5030329
NCBI-ProteinID:
XP_001444545
Genoscope:
GSPATT00012654001
UniProt:
A0D281
LinkDB
All DBs
Position
undetermined
AA seq
364 aa
AA seq
DB search
MDPPPQDTILNAMYQLWVLGALDNVGELTELGRKMSEFPLDPPLSKMLIKGDQLGCTEEI
LTVVSMLSVPGIFYRPKDREAESDAAREKLFVGESDHLTMLNVFEQWKRHEFSPEWCNEH
FVQAKSMRKVREVRAQLKDIAGKLGLKMSTCNFSYDVVRKAICSAYFQNAAKIKGVGDYI
NLRTGMPCKLHPSSALYSLGYAPDYVVYHELVMTSKEYMHCVSAVDPQWLAEMGPMFFSI
KEDGETRASRIESEKKSKREIELSIEKAKREHEMKSEECLRRREKEDRERRLISERTATL
GFKPSRIQTPLRQQTSSVAATPLRSECESVISGMTSIQAKQMRMAYYDDEEEQDVGRNKI
PKVE
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggatcctcctccttaagatactattttaaatgctatgtatcaattgtgggtgttggga
gcattagataatgtaggtgaattaacagagcttggtaggaagatgagtgaatttccattg
gatccaccattgtcaaaaatgttaatcaaaggagattaattaggatgcactgaagaaatc
ctaactgtagttagtatgttgagtgttccaggcatattttatagacctaaagatagagaa
gcagaaagtgatgctgctagagagaagttgtttgtcggagaaagtgatcatttgactatg
ttaaatgtatttgagtaatggaaaagacatgaattttcacctgaatggtgtaatgaacat
tttgtttaagcaaagagtatgagaaaagttagagaagtgagagcctaattaaaggatatt
gctggtaaattaggattaaaaatgagtacttgtaatttctcttatgatgttgtaagaaag
gctatatgttcagcatatttttagaatgctgccaaaattaaaggtgtcggagattatata
aatttacgtacaggtatgccatgtaaactacatccttcaagtgctttatattctctaggt
tatgctccagattatgttgtttatcatgagttggttatgacatctaaagaatacatgcat
tgtgtgagtgctgttgatccttaatggttggctgagatgggtcccatgttttttagtatc
aaagaagatggtgagactagagcttctcgtattgagagtgaaaaaaagagtaagagagaa
attgagttgtccattgaaaaagctaagagagaacatgaaatgaagagtgaagagtgtctg
agaaggagagagaaagaggatagagagaggagattaattagtgaacgtacagctactttg
ggattcaaaccaagtagaatacaaacaccattaaggcaataaacttcatcagtcgcagcc
actcctttaagaagtgaatgtgaatctgttatctctggaatgacaagcatctaagctaaa
taaatgaggatggcatattatgatgatgaagaagagtaagatgttggtagaaacaaaata
cccaaagtagaatga
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