Picrophilus torridus: PTO0672
Entry
PTO0672 CDS
T00177
Definition
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pto
Picrophilus torridus
Pathway
pto03030
DNA replication
pto03410
Base excision repair
pto03420
Nucleotide excision repair
pto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pto00001
]
Genetic Information Processing
Replication and repair
03030 DNA replication
PTO0672
03410 Base excision repair
PTO0672
03420 Nucleotide excision repair
PTO0672
03430 Mismatch repair
PTO0672
Enzymes [BR:
pto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PTO0672
6.5.1.6 DNA ligase (ATP or NAD+)
PTO0672
6.5.1.7 DNA ligase (ATP, ADP or GTP)
PTO0672
DNA replication proteins [BR:
pto03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
PTO0672
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
PTO0672
DNA repair and recombination proteins [BR:
pto03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
PTO0672
NER (nucleotide excision repair)
Other NER factors
PTO0672
MMR (mismatch exicision repair)
Other MMR factors
PTO0672
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
Other DBs
NCBI-ProteinID:
AAT43257
UniProt:
Q6L195
LinkDB
Position
690837..692609
AA seq
590 aa
MLYINMDFSDVASYFSRMEETTKRLELTSILAELFKRSGDDLKKLVYLVQGKLMPDYLGI
ELGLSDKLIIKSLSKASGRSEEDINRIFSRLGDLGSTAEEISSSGIQRPLLKESLTVDYV
YNQLIKISGYTGHGSIKTKMDAYIDLLINSGPMEIKYITRIITGKLRLGVADSTILDGLI
EAFSEKKYADDIETAYNFHPDLGYIAENLMMGNINELLNAGPVPLIPFKVMLAERLQSIS
DIRNKMGHNASYEYKYDGLRTQLHFLKGGIKIFSRGLEETTSSFPDIVQNFKSYYSFDSC
IIDGESVPYNPETGELYPFQMVSKRRGRKYELTEKTREVPIVMFIFDILYLNGKSLVNLP
YPERRSILEKNFKENEYFKLAKRIVSDDEHDIMKFFERSIEEGCEGIVAKSNGIDSIYRA
GARGWLWIKFKRDYQSELSDSLDLVVVGAFDGHGRRKGTFGALLLACYNSKDDTFETVCK
LGSGFTDEMLSEMPRLLGDKIVEKKPARVNSSMEPDHWIYPSLVLEIRGAEITVSPVHTC
AMNIIEKGSGLALRFPRLIKPRDDKKPEDATTTNEIIEMYKAQKKVIEKS
NT seq
1773 nt
+upstream
nt +downstream
nt
atgttatatataaatatggatttctcggatgttgcatcatacttctcaaggatggaggaa
acaacaaaacgtttggaattaacatcaatacttgctgagctttttaaaagatcaggtgat
gatttaaaaaagcttgtctaccttgtacagggcaagctaatgccggattacttgggcata
gagcttgggctttcagacaaattgataataaaatcgctttcaaaggcgtcgggcagatca
gaagaggatataaacaggatcttctcgaggcttggcgatcttggctccacagcagaggaa
ataagctcatctggaattcaaaggccacttctaaaggaaagtttaacagtcgattatgtt
tacaaccagcttattaagatctcaggttatacaggtcacggaagcataaagacaaagatg
gatgcatacatagatcttttaataaactcgggacccatggagataaaatacataacaagg
ataataactggaaaattaaggcttggcgttgcagattcaacaatacttgatggcttaata
gaggcattttcagagaaaaaatacgcagatgatatagaaacagcgtataattttcacccg
gatcttggctacattgcagagaacctaatgatgggaaatataaatgaacttttaaatgcc
ggtccggttccattaataccatttaaggtcatgctggcagagaggcttcaatcaatttct
gatataagaaataagatggggcacaatgcatcatatgaatataaatacgatggcctcagg
acacagctgcacttccttaaaggcgggataaagatattttccaggggtcttgaggaaacg
acatcaagctttcctgacattgttcaaaattttaagtcatactattcatttgattcgtgt
ataatagatggtgaatcagtgccatacaatcctgaaacaggtgaattatatccatttcaa
atggtttcaaagcgtcgtgggagaaaatatgaactaacagaaaaaacaagggaggtgcca
attgtcatgtttatattcgatatattatatttaaacggtaaatcccttgttaatctgcca
tatcctgaaaggagatcaatactggagaagaattttaaggaaaacgagtactttaagctt
gcaaaaagaatagtttcagatgatgaacacgatataatgaaattctttgaaagatcaata
gaggagggctgtgagggtatagttgcaaagagtaacggcatagattcaatatacagggca
ggtgccaggggctggttatggataaagtttaagagggactaccagagtgagctttccgac
tccctggatctggttgttgttggtgcattcgacggccatggacgtagaaagggaacattt
ggggctcttttgctggcatgctataacagcaaagatgacacatttgaaacggtatgcaag
cttggctcgggctttacagacgaaatgctatctgaaatgccaaggctccttggggacaaa
atcgttgaaaagaagcctgcaagggtgaactcatcaatggaaccggatcactggatatat
ccgtcacttgttcttgagatacgcggtgctgaaataacagttagccctgttcatacctgt
gcaatgaacatcatagaaaagggctctggccttgcattaaggtttccaaggttaataaag
ccaagggatgataaaaagccagaggatgcaacaacaacaaatgagattatagaaatgtat
aaagcacagaaaaaggttattgagaagagttaa
DBGET
integrated database retrieval system
