Puccinia triticina (wheat leaf rust): PtA15_13A167
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Entry
PtA15_13A167 CDS
T09180
Name
(RefSeq) uncharacterized protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ptrc
Puccinia triticina (wheat leaf rust)
Pathway
ptrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PtA15_13A167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptrc03041
]
PtA15_13A167
Enzymes [BR:
ptrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PtA15_13A167
Spliceosome [BR:
ptrc03041
]
Complex C
Other components
Step II factors
PtA15_13A167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
S1
AAA_22
AAA_19
AAA_30
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_16
Flavi_DEAD
TsaE
PhoH
NB-ARC
AAA_7
Motif
Other DBs
NCBI-GeneID:
77803232
NCBI-ProteinID:
XP_053026323
LinkDB
All DBs
Position
13A:join(1766177..1768211,1768283..1769122,1769210..1769461,1769524..1769770,1769846..1770023,1770120..1770185)
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AA seq
1205 aa
AA seq
DB search
MDQEFEKLEILSLVNSITKELHNHVGLQDSTLAEYLISLHEESTSFENFKLKLQEIGAEF
PESFITNMDRLVTSLHPKYKKKKLPAEGKGKEKDIDPAEDEEELERKKRRAQALFPALAL
PDRSWEPSFVPDPKDATAKNTSTADQLLEELEHVGRRHRELQAVREEEQEDDASSDYNRP
TKMPRRDRSASRERGRRSPEPRSGRFRDDYSGGRFDDRGRQRDNGYGNRASKAPDTRPVL
YKIYDGTVASIKDFGCFVTLKGVAGKAEGLVHVNAIAAGRVNHPSDLVSRGQPVKVKVVS
IAGERIGISMKDVDQNTGADLTPHLRIKSDAEMAEEEAQYAARHVNHSVGAGFADDNRSS
SARRLTSPERWEIKQLIASGAASAADYPNLDDDLTTPGSTNGMAAAATAEEELDIEMRED
EAPFLKGAHRRVLDLSPVKIVKAPDGTLNRAALAGAGLAKERRELRQQEANERADAETQD
TSTAWLDPVAKPHERLFAQDARDNTMGKKQEESGWKQATFNQATTYGKITSLSITEQRAS
LPIYKLRDALVKAVKENQILVVVGDTGSGKTTQMTQYLAEEGLADEKKIACTQPRRVAAM
SVAKRVAEEVGCRLGQDVGYTIRFEDCTSSETKIKYMTDGMLQREALVDPNLSAYSVIML
DEAHERTIATDVLFGLLKKSIMRRPDLKLIVTSATLDAEKFSKYFYSCPIFTIPGRTYPV
EVLYTKEPESDYLDAALITIMQIHISEPPGDILLFLTGQEEIDTSAEILYERMKALGSHV
PELIVLPVYSALPSEMQSKIFDPAPPGARKVILATNIAETSITIDGIYYVVDPGFVKQKA
WDPRLGMDSLVVTPISQAQARQRSGRAGRTGPGKCYRLYTEAAYRNEMLPTSIPDIQRQN
LAHTILMLKAMGINDLLNFDFMDPPPQQTMITALENLYALSALDDEGLLTRLGRKMADFP
MDPELSKMLIASVDLGCSEEVLTIVAMISGATNVFYRPKEKQAQADAKKAKFHQPEGDHL
TLLAVYDGWKNNKFSNPWCHENYIQSRAMRRAQDVRKQLLGIMDRYKHDIVSCGTNYDRV
RRAICSGYFRHAAKKDPQEGYKTLVEGTPVFIHPSSALFNRAPEWIIYHELVLTTKEYCR
DVTAIEPKWLTEVAPTFFKVADAKTMSKRKRNERVQPLFDRFAKSENEWRISKVKRSTRT
SQTFG
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaattcgagaaactagagatactctcgcttgtcaacagtatcacgaaggaa
cttcacaaccatgtcggacttcaggacagcaccctcgcagaatatttgatctcactccat
gaagaatcgacctcattcgaaaatttcaaactcaaactccaagagatcggcgccgagttc
ccagaaagcttcatcaccaacatggatcgactcgtgaccagcctacatcccaagtacaag
aagaagaagctgccagctgaaggcaaggggaaagagaaagacatcgatccagcggaagac
gaggaagaactcgaacggaaaaaacggcgagctcaggccttattccctgcactggcgctt
ccggatcgctcctgggaaccaagtttcgtgcccgatccaaaggacgcaacagccaagaat
acttcaactgcagatcagctactagaagaactcgaacatgttggcagacggcatagagaa
ctacaagcggtccgcgaagaagagcaagaagatgacgccagctcagattacaatcgtccc
acaaagatgcccagacgagaccgatcagcaagtcgtgaaagaggaaggcgctccccggag
cctagatccggacgtttcagagatgattattcgggtggccggtttgatgaccgaggacga
cagcgcgataatggctacggcaacagagcatcaaaagctccagatactcgtccggttcta
tacaagatttacgacgggactgtggcctcgatcaaagatttcggatgctttgtcacctta
aaaggtgtcgccggaaaggctgaagggctagtacacgtcaatgctattgcagctgggaga
gtcaatcatccttccgatctggtgtccagagggcaacccgtcaaagtcaaggtggtttcg
attgcgggcgagcggatcggaatctcaatgaaagatgttgatcaaaacacgggagcagat
ctaaccccgcatttaagaatcaagtccgatgctgagatggccgaggaggaagctcaatat
gcggctcgacacgtcaaccacagcgtgggtgccggttttgcagacgataaccgctcttcc
agtgctcgtcgtctcacctcacccgagcgatgggagatcaaacaactgattgcttcaggg
gcggccagcgccgcagattatccaaacctcgacgacgatctcaccactccaggaagcacg
aacgggatggcagcagcggcgacggcagaggaggaactggatatcgagatgagagaggat
gaggccccgttcctgaaaggtgctcatcgccgagtgctcgacctgagtcctgtcaaaatc
gtcaaggctcccgatggtacactcaacagggctgcgttggctggtgctggtttggccaag
gaacggcgagagctgcgtcaacaggaagcaaacgagcgggcggatgcagaaactcaagat
actagcacggcatggctcgatccagtggccaaaccccacgagcgactcttcgcccaagat
gctagggataatactatgggcaagaagcaagaagagtctggctggaagcaagctacgttc
aaccaagccacaacctatgggaagatcacctctctgagtattacggaacagcgggccagt
ttgcctatttacaaactgcgagacgcgctggtcaaggccgtcaaggaaaaccaaattctt
gtcgtcgttggagataccgggtcgggcaagaccacacaaatgacacagtatctggcggaa
gaaggcctagcagatgagaagaagattgcctgcacccaaccccgtcgtgtggcagcgatg
tcggtagctaaaagagtggctgaagaagtggggtgtaggttaggtcaagacgtaggttac
acgattcggttcgaggattgtacaagttcagaaacgaaaatcaagtacatgaccgatgga
atgctccaaagagaagctctggtcgatcccaatctatcagcctattcggtcatcatgttg
gacgaggcacacgaaaggacgattgccacagatgtgctctttgggcttctaaaaaaatcc
atcatgcgtcgacccgatctcaagttgatcgttacttcagctacactggacgccgaaaag
ttttcgaaatacttttactcctgtccgattttcaccatccccggtaggacgtatccggtc
gaagtgctctacaccaaagaacccgaaagcgattatcttgatgctgccctgattacgatc
atgcaaatccatatctctgagccaccgggagacatactcctgttcttgactggacaggaa
gaaatcgatacttctgctgagatattgtatgagcggatgaaggctctgggatcacatgta
ccagaattgatcgtcttgccagtctattccgcgctgccttcggagatgcaatccaagatc
ttcgatccagcccctcccggagcccgaaaagtgatcctagccacgaacatcgccgaaaca
tcgatcacgatcgacgggatctactacgtcgttgaccctgggtttgtgaagcaaaaggca
tgggaccctcgactgggaatggattctttggtcgtcactccgatctctcaagctcaagcc
agacaacgttctggtcgtgctggtcggaccgggccgggaaaatgttaccgactgtatacc
gaagccgcctatcgaaacgaaatgttgccgacttcgatccccgatatccagcgtcaaaac
ttggctcacaccatcttgatgttgaaagccatgggcatcaatgatctgttgaactttgat
ttcatggaccctcctccgcaacaaaccatgatcactgccttggaaaacctgtatgcgctc
tctgctctggatgacgagggtttgttgacgcgcttgggccggaagatggccgattttccg
atggaccccgagttatcaaaaatgttgattgcatcagttgacttgggctgctcggaggaa
gtcttgacgattgtggcgatgatcagtggtgcgacaaatgtgttttatcgtcccaaggag
aaacaggcgcaagcggatgccaagaaggccaagttccatcaaccagagggtgatcacctg
acactcctggcagtatatgacggctggaaaaacaacaaattcagtaatccttggtgccac
gaaaactacattcagtctcgggccatgagaagagcgcaagatgtacggaagcaattgctg
ggtattatggaccgatataaacatgatatcgtgtcctgtggaacaaattatgatcgggtc
cgtcgcgccatctgctcaggttacttcagacatgctgccaagaaagatccccaggaggga
tacaagacgttggttgaaggaactccggtgttcattcatccctcttctgcgctcttcaat
cgcgcccccgaatggatcatctatcatgaattggtcttgactactaaggaatattgtcgt
gatgtcaccgctatcgagccgaaatggctcaccgaagtcgccccgactttcttcaaagtg
gccgatgccaaaaccatgtcgaaacgcaaacggaacgaaagagtccaacccctgttcgac
cgattcgccaagagcgaaaacgaatggcgtatttcgaaagtcaaacgcagtactcggacc
agtcaaacgtttggttaa
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integrated database retrieval system
