Paraburkholderia tropica: G5S35_06465
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Entry
G5S35_06465 CDS
T07044
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ptro
Paraburkholderia tropica
Pathway
ptro03030
DNA replication
ptro03410
Base excision repair
ptro03420
Nucleotide excision repair
ptro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5S35_06465 (ligA)
03410 Base excision repair
G5S35_06465 (ligA)
03420 Nucleotide excision repair
G5S35_06465 (ligA)
03430 Mismatch repair
G5S35_06465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptro03032
]
G5S35_06465 (ligA)
03400 DNA repair and recombination proteins [BR:
ptro03400
]
G5S35_06465 (ligA)
Enzymes [BR:
ptro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G5S35_06465 (ligA)
DNA replication proteins [BR:
ptro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G5S35_06465 (ligA)
DNA repair and recombination proteins [BR:
ptro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G5S35_06465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G5S35_06465 (ligA)
MMR (mismatch excision repair)
DNA ligase
G5S35_06465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G5S35_06465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
MctB
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QNB11247
LinkDB
All DBs
Position
A:1443752..1445812
Genome browser
AA seq
686 aa
AA seq
DB search
MVRHPARPSEASTATERAAWLRAELERANHAYYVLDQPELPDAEYDTLFRELQAIEAEHP
DLITPDSPTQRVGGEASEGFEPVVHDVPMLSLNNGFADEDIAAFDKRVHDTLGKPEGELV
EYACELKFDGLAISLRYVDGVFVQASTRGDGATGENVTENVRTIRSLPLRLKGKRVPKVL
DVRGEVLMFRRDFARMNDRQREAGHKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIG
VLEGEPMPATHSELLDWYAEMGLPVNGERAVVKGAQGLLDFFRAVGEKRESLPYDIDGVV
YKVNRRDEQDALGFVSRAPRFALAHKFPAQEALTKLLAIDVQVGRTGAITPVARLEPVFV
GGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAAEFVMPTEC
PVCGSRIERLPDEAIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLV
RTPADLFNLGFATLAELDRMAEKSAQNLLDSLEKAKSTTLARFIYALGIRQVGESTAKDL
AKYFGSLDPIMDASIEQLLEVKDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGP
PAPKAPVGVLAGKTVVLTGTLPTVTRDEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSK
LAKAEELGVPVLDEDGLHKLLEGHTT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggtccgtcatcccgcccgtccctctgaagcatccaccgcgaccgagcgcgcggcgtgg
ctgcgcgccgaactcgagcgcgccaatcacgcttactacgtgctcgaccagccggagctg
cccgacgcggaatacgacacgctgttccgcgagttgcaggcgatcgaggccgagcatccc
gacctcatcacgcccgattcccccacgcagcgcgtaggcggcgaggcgtcagagggtttc
gagccggtcgtccacgacgtcccgatgctgtcgctcaacaacggtttcgccgacgaagac
atcgctgcgttcgacaagcgcgtgcacgacacgctcggcaagcccgaaggcgaactggtc
gaatacgcctgcgagctcaagttcgacgggttggccatttcgctgcgttatgtcgacggc
gtgttcgtgcaggcgtccacgcgcggcgacggcgcgacgggcgagaacgtcaccgagaac
gtgcggacgatccgctcgctgccgctgcggctgaagggtaagcgcgtaccgaaggtgctc
gacgtgcgcggcgaagtactgatgttccgccgcgacttcgcgcgcatgaacgatcgtcag
cgcgaggccgggcacaaggaatttgcgaacccgcgcaacgcggcggcgggcagcctgcgt
cagctcgattcgaagatcacggcgcagcgtccgctgtcgtttttcgcttatgggatcggc
gtgctcgaaggcgagccgatgccggccacgcatagcgaactgctcgactggtacgcggaa
atgggcctgccggtgaatggcgagcgcgcggtcgtgaagggcgcgcaaggcttgctcgac
ttcttccgcgcggtcggcgagaagcgcgagagcctgccgtacgacatcgacggcgtggtc
tacaaggtcaaccgccgcgacgagcaggacgcgcttggtttcgtctcgcgcgcgccgcgc
tttgcgctcgcgcacaagtttccggcgcaggaagcgctcacgaagctgctggccatcgac
gtgcaggtgggccgtaccggcgccatcacgccggtcgctcggctggagccggtgttcgtg
ggcggcgcgaccgttacgaacgccacgttgcacaatgaagacgaagtgcgccgcaaggac
attcgcatcggcgacacggtaatcgtgcggcgcgccggcgacgtgattccggaggtggtg
agcgcgctgctcgatcgtcgtccggccgacgcggccgagttcgtcatgccgaccgaatgt
ccggtgtgcggttcgcgcatcgaacgtctgcccgacgaggccatcgcgcgctgctcgggc
ggattgttctgtccggcgcagcgcaagcaggcgctctggcatttcgcacagcggcgcgcg
ctcgacatcgacggtctgggcgagaagattatcgaccagctcgtcgagcagaatctcgtg
cgcacgcccgcggacctgttcaatctcggtttcgcgacactcgcggaactggatcgcatg
gccgagaaatcggcgcaaaacctgctagattcgctcgaaaaagccaagtcgaccacgctg
gcgcgcttcatttatgcactgggcatccgtcaggtgggcgagtccaccgcgaaggatctg
gccaaatacttcggctcgctcgatccgatcatggacgcgagcatcgagcaactgctcgaa
gtgaaggacgtggggccgatcgtggcggagtcgatccaccagttctttgcggaagaacat
aaccgcaccgtgatcgagcaactgcgcgcgccgggcaaggtcacatgggctgaaggtccg
cctgcgccaaaagcgccggttggcgtgctcgcgggcaagacggtggtgctcacgggcacg
ttgcccacggtcacgcgcgacgaggcgaaagagatgctggaagcggctggcgcgaaggtg
gccggctcggtgtcgaagaagaccgactacgtggtggcgggtgccgaagcgggcagcaag
ctcgcgaaagccgaggaactcggcgtgccggtgctcgacgaggatgggttgcacaagctc
ctggaggggcacacaacatga
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