Paraburkholderia tropica: G5S35_22580
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Entry
G5S35_22580 CDS
T07044
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptro
Paraburkholderia tropica
Pathway
ptro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G5S35_22580 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptro03021
]
G5S35_22580 (rpoD)
Transcription machinery [BR:
ptro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G5S35_22580 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
Motif
Other DBs
NCBI-ProteinID:
QNB14328
LinkDB
All DBs
Position
B:1749827..1752235
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AA seq
802 aa
AA seq
DB search
MAKTTGGKKATGTGSTEPTGKVTNAQDAPSASSRRKAATASHEVPAVRKKAMAASAARAA
PTRAAKAATHPATKRSGGPSSARQVPAVADDAAEREAPVSTVQEADVQQPRVETTAGTAN
SMTKKLNEVPVDDDANQSEESTPTPAAKGEKTTRARDRRAKEKALLKDAFASSQPGTVEE
LEERRNKLRALIKLGKERGYLTYAEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAPD
AETLLLNDNAPNASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEI
EIAKRIEDGLMHMVMAISACPTTIADILAMAERVANDEIRVDELVDGLVDPNAEDTDGFN
AKEAEEIENESEEDEEEEEEEEEDDDGAAQATANAAQLEALKRASLEKFALISEWFDKMR
RAFEKEGYKSKAYLKAQETIQTELMSIRFTARTVERLCDTLRAQVDEVRQVERQILHTVV
DKCGMPRSEFIARFPGNETDLDWSEKIVGENHAYSAILSRNIPAIREQQQRLLDLQARVV
LPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQ
ETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPS
DAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEA
KALRKLRHPSRSDKLKSFLEGN
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagactacaggcggaaaaaaggcgacaggcacaggctcgacggagccgaccggc
aaggtcacgaatgcccaggacgccccatccgccagttcccgccgcaaggcggcaaccgcc
agtcatgaagtacccgcagtccggaagaaagccatggctgcttcggccgcgcgagcggcg
ccaacccgtgcggcgaaagctgcaactcatccggcaacgaagcggtccggtggtccgagt
agtgcaaggcaagtgcctgccgttgcggacgatgcggcagagcgcgaggctccagtatcc
acggttcaagaggctgatgtccaacagccgcgagtcgagactacagccggtacggcgaac
tccatgacgaaaaagctgaatgaagtgcccgtcgatgacgacgcaaaccagagcgaggaa
agcacgcccaccccggcggccaagggtgagaagaccacccgtgcgcgcgaccggcgagcg
aaggaaaaggcgctgctgaaagacgcgttcgcgtcgtcgcagcccggtaccgtcgaggaa
ctcgaggaacgtcgcaacaagcttcgcgcgctcatcaagcttggcaaggagcgcggctac
ctcacctacgccgaaatcaacgatcaccttccggataatttcacggaaaccgaggcgatc
gaaggcatcatcagcacgttcaacgacatgggcgtcgccgtctacgaacaggcgccggat
gccgaaacgctgctcctcaacgacaacgcaccgaacgcctcttccgacgacgaagtcgag
gaagaagccgaggtcgcgctctcgaccgtcgactccgaattcggccgtacgaccgacccc
gtgcgcatgtacatgcgcgaaatgggcacggtcgaactgctgacgcgcgaaggcgaaatc
gaaatcgccaagcgtatcgaagacggcctcatgcacatggtcatggcgatctccgcttgc
ccgaccacgattgccgacatcctcgccatggccgagcgcgtcgcgaacgacgagattcgc
gtcgatgagctcgtcgacggcctggtcgatccgaacgccgaagacaccgacggcttcaac
gccaaggaagcggaagagatcgagaacgaaagcgaggaagacgaagaggaagaggaagaa
gaggaagaggacgacgacggcgcggcgcaggcgacggccaacgcggcgcagctcgaagcg
ctcaagcgcgcctcgctcgaaaaattcgcgctcatcagcgaatggttcgacaagatgcgc
cgcgcgttcgaaaaggaaggctacaagtcgaaggcctacctgaaggcgcaggaaaccatc
cagaccgagctgatgtcgatccgcttcacggcgcgtaccgtcgagcgtctgtgcgacacg
ttgcgcgcgcaagtggacgaagtgcgccaggtcgaacgccagatcctgcacacggtcgtg
gacaagtgcggcatgccgcgctcggagttcatcgcccggttcccgggcaatgaaaccgac
ctcgactggtccgagaagatcgtcggcgagaaccacgcgtatagcgcgattctgtcgcgc
aatattccggcgatccgcgaacagcagcagcgcctgctcgatctgcaggcgcgcgtggtg
ctgccgctcaaggacctcaaggaaaccaatcgccagatggcggcgggcgaactgaaggcg
cgacaggccaaacgcgaaatgaccgaggccaatttgcgtctcgtgatctcgattgcgaag
aagtacacgaaccgcggtctgcaattcctcgacctcattcaggaaggcaatatcggcctg
atgaaggcggtagacaagttcgaataccggcgcggctacaagttctcgacctacgccacg
tggtggatccgtcaggccatcacgcgttcgattgcggaccaggcgcgcacgatccgtatt
ccggttcacatgatcgagacgatcaacaagatgaaccgcatttcgcggcagatcctgcag
gaaaccggtctcgagccggatccggccacgctcgccgagaagatggaaatgccggaggac
aagatccgcaagatcatgaagatcgcgaaggaaccgatctccatggaaacgccgatcggc
gacgacgacgattcgcatctgggcgactttatcgaagataccaacactgtggcgccgtcg
gacgccgcgttgcacgcttcgatgcgcgacgtggtgaaggacgtgctcgactcgctcacg
ccgcgcgaggcgaaggtgctgcgcatgcgtttcggtatcgagatgagcaccgaccatacg
ctggaagaggtcggcaagcagttcgacgtgacgcgcgagcggattcgccagatcgaggcg
aaggcgctgcgcaaactgcgtcacccgagccgctcggacaagctcaagtcgttcctcgaa
ggcaattga
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