Paraburkholderia terricola: CUJ90_07895
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Entry
CUJ90_07895 CDS
T05812
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pts
Paraburkholderia terricola
Pathway
pts03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CUJ90_07895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pts03400
]
CUJ90_07895 (ligD)
Enzymes [BR:
pts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CUJ90_07895 (ligD)
DNA repair and recombination proteins [BR:
pts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CUJ90_07895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXE92285
LinkDB
All DBs
Position
mHS1_A:1735319..1738213
Genome browser
AA seq
964 aa
AA seq
DB search
MNDRLDLYNRKRRFDETPEPAGTSARKRAGRKTSARESNEALSYVIQEHHARRLHYDFRL
ELNGTLLSWAVPKGPCLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGTVIVWDRGTW
EPVGGAAQAAKTYAAGKLKFILHGDKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARDE
SEYDILKERPGSVLDGSAPAQKGAKTAKRASAAKEATSTSRTGRSAAARTASSNRASRGD
PKRPDIVATRSAQSLRELAVSPSIEGAVEAKLPATFKPQLATLVDSAPPGDQWSYEIKFD
GYRVLARIDHGTKGGAVKVFTRAGNDWTTKFSKQVKALEQLDLETAWLDGEAVVLDENGV
PSFQALQNAFDSNRPQDIAIYLFDVPFLNGYDLRGVPLQQRRAILRALLEGVDDNVLRFS
NDFEFSAEDLLKSACDMALEGIIGKRRDSGYMSGRSSAWIKLKCRRRQEFVIGGYSEPSG
SRAAFGALLLGVHDSKGKLQYAGRVGTGFDAALLRSVKKELDAHETQRMPFAAPPRERSR
TPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRNDKPASQIVKEAPRKGADVQQQTDTA
SAAAPKKRAARRAEANAVSEPDDTRAKQAGKTSGAKTTAAKTSGAKTSAAKTSAAKTATA
KSKAASTASEVAGVRVSHPDRVIDKSTGTRKIDLVRYYESVADWMLPYLRDRPVSLVRAP
EDIGGELFFQKHSQKLSIPNITQHPGLDPGHPPLITVETIGALVGAAQMGTVEFHTWNAV
ASNIEKPDRMVFDLDPDASLGWERMIEAAQLTRSLLEELGLTSFCKTSGGKGLHVVVPLA
RQAGWDEVKGFSQAVAQHMAATLPKYFSAKMGAQNRKQKIFVDYLRNNRGSSTIVAFSAR
ARPGMGVSVPLSWDEVASTTAGDQWNIENLHERLADLAGDPWADYPTTRQRITAAMKKRL
DGAK
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacaggctcgatctctacaaccgcaagcgccgcttcgacgaaacgccggagccc
gcgggcacgagcgcgcgcaagcgcgccggccgcaagacgagtgcgcgcgagtcgaacgag
gcgctgtcctacgtgattcaggagcatcacgcgcggcggcttcactacgacttccggctc
gaactgaacggcacgctgctgtcgtgggcggtgccgaaggggccgtgtctggacccgtcg
gtgaagcggctcgccgtgcatgtcgaggatcatccggtcgagtatggctcgttcgaaggc
gagattccgcctggcaactacggggcgggcaccgtgatcgtgtgggaccgcggcacctgg
gagccggtcggcggcgcggcgcaggcggccaaaacctacgcggccggcaagctcaaattc
atcctgcacggcgacaagctgcacggcggctggacgctggtgcgcagccacatgcgcggc
agcggcgacaaggagcagtggctgctgatcaaggagcgcgacgacgaagcgcgcgatgaa
agcgagtacgacattctgaaggagcgacccggcagcgtgctcgatggaagcgcgccggcg
cagaagggcgcgaagacggcgaaacgcgcgtccgcggcgaaggaagcgacgagcacgagc
cggaccggcaggagcgccgccgccaggaccgcttcatcgaaccgcgcgagccgcggcgat
ccgaaacgacccgacatcgtggcgacgcgcagcgcgcagtcgctgcgtgagctcgccgtg
tcgccgtcgatcgaaggcgcggtcgaggcgaagctgcccgccaccttcaagcctcaactg
gcgacgctggtcgacagcgcgccgcccggcgatcaatggtcgtatgagatcaagttcgac
ggctaccgcgtgctggcgcgcatcgaccacggcacgaagggcggcgcggtgaaggtattc
acgcgcgcgggcaacgattggaccacgaagttcagcaagcaggtcaaggcgctcgaacag
ctcgacctcgaaaccgcatggctcgacggcgaggcggtggtgctggacgagaacggcgtg
ccgagttttcaggcgctgcagaacgcgttcgattcgaaccgtccgcaggacatcgccatc
tatctgttcgacgtgccttttctgaacggttacgacttgcgcggcgtgccgctgcaacag
cgccgcgcgatcctgcgcgcgttgctggaaggcgtcgacgacaacgtgctgcgcttctcg
aacgatttcgaattcagcgccgaggacctgctcaagagcgcatgcgacatggcgctcgaa
ggcatcatcggcaagcggcgcgacagcggttatatgtcgggacgctcgtccgcgtggatc
aagctgaagtgccggcgccgccaggagttcgtgatcggcggctattcggaaccgtccggc
agccgcgcggcgttcggcgcgctgctgctcggcgttcacgacagcaagggcaagctgcaa
tacgccgggcgcgtcggcacgggcttcgatgccgcgttgctgcgctcggtgaagaaggag
ctggacgcgcacgaaacccaacgcatgccgttcgcggccccgccgcgcgagcgcagtcgc
acgccggtgcattgggtcgaacccgtactcgtcgccgaatgcaacttcgccgagtggacg
agcgacggcatcgtgcgccaggcgtcgttcgtgagtctgcgcaacgacaagccggcgagc
cagatcgtcaaggaagcaccccgcaaaggagccgacgtgcaacagcaaaccgataccgcg
tccgccgccgcgccgaagaaacgcgcggcgcgacgggccgaagcaaacgccgtgtccgag
ccggatgacacgcgtgcgaagcaggcaggaaaaacgtccggcgccaaaaccacggccgcg
aaaacgtccggcgccaaaacctcagccgccaaaacctcggccgccaaaaccgccacggcg
aaatcgaaagccgcctcgactgcctccgaagtcgccggcgtgcgcgtctctcatcccgat
cgcgtgatcgacaaaagcaccggcacgcgcaagatcgacctcgtgcggtactacgaatcg
gtggccgactggatgctgccgtatctgcgggacaggccggtatcgctggtgcgcgcgccc
gaggacatcggcggcgagctgtttttccagaagcacagccagaagctgtcgatcccgaac
atcacgcagcatcccgggctcgaccccggccatccgccgctgatcaccgtcgaaaccatc
ggggcgctggtgggcgccgcgcaaatgggcaccgtcgagtttcatacctggaatgcggtg
gcgtcgaacatcgagaagcccgatcgcatggtgttcgatctcgaccccgacgcgtcgctc
ggctgggagcggatgatcgaggccgcgcagctcacgcgctcgctgctggaggagctcggt
ctcacgtcgttctgcaagacgagcggcggcaagggactgcatgtggtggtgccgctcgcc
aggcaggccggctgggacgaagtgaagggcttttcgcaagccgtcgcgcagcatatggcg
gccacgctgccgaagtacttcagcgcgaagatgggcgcgcagaatcgcaagcagaaaatt
ttcgtcgactatctgcgcaacaaccgcgggtcgagcacgatcgtcgcgttctcggcgcgc
gcgcggccgggcatgggcgtctcggtgccgctgtcgtgggacgaagtcgccagcaccacg
gccggcgatcaatggaatatcgagaacctgcacgagcggctcgccgacctcgcaggcgac
ccctgggcggactacccgacgacgcgtcagcggattaccgcggcgatgaaaaaacgtctg
gacggcgcgaagtga
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