Photorhabdus thracensis: VY86_10170
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Entry
VY86_10170 CDS
T03944
Name
(GenBank) RNA polymerase sigma factor FecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ptt
Photorhabdus thracensis
Pathway
ptt02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ptt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VY86_10170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptt03021
]
VY86_10170
Transcription machinery [BR:
ptt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VY86_10170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PCI
HTH_11
HTH_24
HTH_7
HTH_Tnp_4
HTH_23
Phage_terminase
HTH_Mga
MarR
U5_2-snRNA_bdg
TnsD
Rv2175c_wHTH
Fe_dep_repress
HTH_36
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
AKH63642
UniProt:
A0A0F7LPB5
LinkDB
All DBs
Position
complement(2361162..2361683)
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AA seq
173 aa
AA seq
DB search
MSDYIVVSAELTLESFYGAHHGWLKNWLTPKLQSSFDADDVAQDTFLRVITNDSLQTIRD
PKSFLCTIAKRVMIDLFRRNALEKAYLELLAQQPEALIPSPEIRQCQLETLQQIDQMIDG
LSNKIRQAFLLSQLESLTYSDIASRLNVSVSSVKKYMAKATEHCLLFRLEHGL
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgtctgactacattgttgtttccgctgagctgacgcttgaatcgttttacggcgcgcat
cacggctggctgaaaaactggctcacgcccaaactgcaatcgtcctttgacgccgacgac
gtagcgcaggataccttcctgcgcgtgataaccaatgattcgctacagacaattcgcgac
ccaaaatccttcctctgcactatcgccaaaagggtgatgatcgatctgtttcgccgcaac
gctctggaaaaagcctatctggaactgcttgcgcaacagcccgaggcgcttataccttcg
ccagaaattcgtcagtgtcagcttgagacgctccaacaaatcgaccagatgatcgatggc
ctgagcaacaaaatacgccaagcgtttttactgtctcagcttgaaagtctgacctacagc
gacatcgcttcacgtcttaatgtgtctgtcagttccgtgaaaaaatatatggccaaagcc
accgagcattgcttgttgtttcgcctggagcatggactctga
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