Pseudomonas tohonis: TUM18999_34190
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Entry
TUM18999_34190 CDS
T07887
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptw
Pseudomonas tohonis
Pathway
ptw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TUM18999_34190 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptw03400
]
TUM18999_34190 (ligD_2)
Enzymes [BR:
ptw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TUM18999_34190 (ligD_2)
DNA repair and recombination proteins [BR:
ptw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TUM18999_34190 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
BCG25228
UniProt:
A0A6J4E724
LinkDB
All DBs
Position
3805365..3807959
Genome browser
AA seq
864 aa
AA seq
DB search
MTKRLDEYNRKRDFTATPEPSGNSNARKRRSPAAHALQFCIQKHDATRLHYDFRLELDGT
LKSWAVPKGPSLDPKSRRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPIGD
PAEGYRKGKLKFELEGEKLSGTWNLVRTHIEGKQEQWFLIKSNDAAARPASDYDIVKALP
DSVLSDRTIVPKKRSGKVAEPKPAKTVSSRTTKNKSVTLKGARTAPLPETLKPQLATLVE
SVPEGDWLYEIKFDGYRIMARIDDGAVRLFTRNGHDWTSKMPRQAEALASLGLESAWLDG
EVIVANEDGVPDFQALQNAFDSGSSGNIVFYAFDMPYLNGMDLRDVPLEQRRSALAQVME
RSEDEVLRYSEDFAESAETMLNSACQMHLEGLIGKLAGSPYVSRRSSTWIKLKCKHRQEF
VVVGYTEPKGSRSAFGALLLGLHDADSGELRFAGKVGTGFNESTLNSIFSQLKSLEIKKT
ALVNPPTGFEAKGVHWLKPELLAEVAYAEITKDGIVRHAVFHGLRNDKPAKAITEERAKP
AAEVEKPVPKKPRTKKSVGEEPSPSAKQIRITHPERVIDATSGSTKMQLAEYYAWVSRWM
LTHPHLKDRPVALVRAPEGIAGELFFQKNAERLAIPGIETMGKEYSGQPVMLINRVEALV
GAVQMSTVEFHTWNATSADLERPNRFVLDLDPDPALPWKRMVEATQLTLTILDELGLASY
LKTSGGKGIHIVVPLAPKASWDEVKEFSHAIVKHMAKLLPDRFSAVSGPKNRIGRIFIDY
LRNSQGATTIGAYSARTREGLPVSVPIFREEVAELKGANAWNIHNLHERLTELGSDDPWA
GYPKTKQVITKEMRERIGLKKRVG
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagcgattggacgagtacaaccgtaagcgcgacttcacagctacgcccgagcca
tcgggaaattcaaatgcgaggaaacgtcgctcgcctgctgcccatgccctgcagttttgc
atccagaagcacgatgcaacccgccttcattacgacttccgcttggagttggatggcacg
ctcaagagctgggcggtcccgaaggggccgagcctcgatcctaagtcgcgaaggcttgca
gttcatgtggaagatcacccgctcgactacgccaccttcgaaggcaacattcccgaaggc
cactacggagctggcgatgtcatcgtctgggatagaggggtgtggattccgattggggat
ccagccgagggctaccgaaaagggaagctcaagttcgaactcgaaggcgaaaagctaagc
ggtacctggaacctcgttcgcacccatatcgaggggaagcaggagcagtggtttcttatc
aagtccaacgatgcggcagctcggcctgcttccgactatgacatcgtaaaagccctcccc
gacagcgtgttgagcgaccgtaccatcgtgccgaagaagcgcagcggcaaggtggccgaa
ccaaaacccgccaagactgtgtcgagcaggacgacgaaaaacaagagcgtcaccctgaaa
ggcgcccgcacagctccgctaccggaaaccctcaagccccagctggccacgttggttgaa
tcagtaccggaaggcgattggctctatgagatcaagttcgacggctaccggatcatggct
cggatcgatgacggggccgtcaggctgttcacccgcaatgggcatgattggacgtccaag
atgccccgccaggccgaggcacttgccagtctcggtttggaatcggcctggctggatggc
gaggtcatcgtcgcgaacgaagacggtgtgcctgatttccaggcactccagaatgccttc
gattcgggcagtagcggcaacatcgtcttctatgccttcgacatgccgtacctcaatggc
atggatctacgagacgtccccttggagcaacgtcgctctgccctggcgcaggtcatggag
cgcagtgaggatgaggttcttcgctattccgaggacttcgctgagtcagctgaaacgatg
ctcaacagcgcctgccagatgcacctcgaaggccttatcgggaagctggccggaagcccg
tatgtttctcggcgaagcagtacctggatcaagctcaagtgtaagcaccgtcaggaattc
gtggtcgttgggtataccgagccgaaggggtcgcgaagcgcgttcggcgcgttgttgctc
ggtttgcacgacgctgatagtggcgagcttaggtttgccgggaaggtcggtaccggattc
aacgaatcaacgctgaactcaatcttctcgcagctcaaatcgctggaaatcaaaaagacg
gcattggtgaacccgccgaccggcttcgaagcgaaaggtgtccattggctcaagccggag
ctacttgccgaggtcgcgtacgcggagatcaccaaggacggaatcgttcgccacgcggtg
ttccatgggttgcgtaacgacaaacccgccaaggcgatcactgaagagcgcgcgaagcca
gccgctgaggttgagaagcctgttcccaagaagccacggacgaagaagagtgtcggggaa
gagccttcaccttctgcaaagcagattcgtatcactcacccagagcgcgtcatcgatgcc
accagcggatcgacgaagatgcagctcgccgaatactacgcgtgggtgtcgcggtggatg
ctcacacacccccatctgaaagatcgccccgttgcgctggttcgggcccctgagggaatc
gctggcgagctgttcttccagaaaaacgccgagcgcctggctattcccggaatcgagacc
atgggcaaggagtactcgggacaaccagtgatgctgatcaatcgagtcgaagcgctggtg
ggcgccgtgcagatgagcacggtcgagtttcacacctggaacgcaacatctgcagatctc
gagcgaccgaaccgctttgtgctggatctagaccccgatcctgcgctgccctggaaacgc
atggttgaggcgacccaactgacgctcaccattctggatgagctgggtctggcctcctac
ctgaaaaccagtggcggcaagggtatccacatagtggtgccgctggcgccaaaggccagt
tgggacgaggtgaaagagttcagccacgccatcgtcaagcacatggccaagctactgccg
gatcgcttctctgctgtttccggccccaagaaccggatcggccggatcttcatcgactac
ctgcgcaacagccagggtgccacgactatcggcgcctactcggcgcgcacccgtgaaggc
ttacccgtatcggttccgatcttccgagaggaagtcgcagagctcaaaggtgcgaacgcc
tggaacatccacaacctgcacgagcgactgaccgaactggggagcgacgacccttgggcg
ggctacccaaaaacgaagcaagtcattaccaaagagatgcgcgagcgcatcggtctcaag
aagagggttggctga
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