Parachlamydia acanthamoebae: PUV_10690
Help
Entry
PUV_10690 CDS
T01552
Name
(GenBank) putative DNA ligase-like protein Rv0938/MT0965
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
puv
Parachlamydia acanthamoebae
Pathway
puv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
puv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PUV_10690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
puv03400
]
PUV_10690
Enzymes [BR:
puv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PUV_10690
DNA repair and recombination proteins [BR:
puv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PUV_10690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CCB86019
UniProt:
F8KYR4
LinkDB
All DBs
Position
1173410..1175794
Genome browser
AA seq
794 aa
AA seq
DB search
MSLGEYRSKRDLNKSKEPSAGKNKRSDALNFCIQKHAARRLHYDFRLEYKGVLLSWAVPK
GPSLDPYDKRLAIQVEDHPLDYQYFEGTIPKGNYGAGKVEIWDRGTYTVPHVTTREEIEK
YLTIGLKKGHFAVILHGEKLQGEFVFQKLKQDAEDTAWLLIKKEDAFATETDHDKPAKQV
KMPEFVTPMLATLADHPFSSEDWLFEIKWDGYRALAFIDPNNVQLKSRNRILLNDRFPVI
VDSLKKVKDKVIFDGELVVLDSAGKSDFQLMQNYQKDHAGVLYYYVFDLLYKDGQDLRNL
PLIERKNLLKKLLKELNLPLIRYSDHIVKDGEDFYKEAVKNKLEGIIGKKVTSTYQSRRS
QDWVKIKTALRQEVVIGGFTEPRGSRKKFGALLVGVYDDQGELHYVGHVGGGFTDELLED
VYKQLLPLSQKKSPFKNIPKPNMPVTWIKPKLVCEVSFAEWTKDDIMRQPIFRGLRIDKN
PKEVKKEIPTASEEKKGRTSKRQELELTNLDKLYWPKEKYTKGDLIAYYQKVAPYLLPYL
RNRPITLHRFPDGIEGKDFYQKNIDFSHPDWLKTFPVQHEGKVDHYLMISDLRSLLYAVN
LGSIDLHPFTSRCKNLEKPDYCIIDLDPHDIAFEKVIEIASATHELLERAKIKNYCKTSG
GKGLHIFIPLHAKYDYEQSKEFAHVIALCIHKQFPTITSVERSPQSRPKKIYLDYLQNRA
LQTIVAPYSVRPRPGALVSTPLLWEEVKPGLDPKDFDIHTILKRLDKMGDIFKPILGGGV
NMQTALNRLKKMFI
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgggagaataccgctctaaacgagatctaaacaaaagcaaagaaccctctgcc
ggaaaaaataaacgttctgatgctttaaacttttgcattcaaaagcatgccgcaaggcgc
ttacattatgactttcgtttagaatacaaaggagttcttttaagttgggccgtgccaaaa
gggccttcacttgacccgtatgataaacggctagccatccaagtggaagaccatcctctt
gattatcaatattttgaaggaactattcccaaaggcaattatggcgctggtaaagtggaa
atatgggatcgaggaacatatacggtgccccatgtaaccacgcgagaggaaattgagaaa
tatctcacaataggtttaaaaaaagggcattttgccgtcattttgcatggtgaaaaacta
caaggagaatttgtttttcaaaagctcaagcaagatgcagaagacacggcatggctttta
attaaaaaagaagatgcttttgcgacagaaacagaccacgacaagcctgctaagcaagtc
aaaatgccagaatttgtgactcctatgctggccacattagctgatcatcctttcagtagc
gaagattggctttttgaaatcaaatgggatggctatcgggccttagcctttatagatcca
aacaatgtgcagttaaagtcacgcaatcgcattcttttaaatgatcgcttcccggttatt
gtggatagcttgaaaaaagtgaaggacaaagtcatttttgacggtgaactagtcgtttta
gactctgcaggtaaatcggactttcaactcatgcaaaattatcaaaaagatcatgcaggg
gtactctactattatgtgtttgatcttctgtataaagatggtcaagacctgcgcaatctt
ccccttattgaacgcaagaaccttttgaaaaagttgttaaaggagttaaatcttccctta
attcgttatagcgatcatatcgtgaaggatggagaggatttttataaagaagctgtaaaa
aataagctggaaggaattattggcaaaaaggtgaccagcacatatcaatctagaagaagt
caagattgggtaaaaattaaaacagccttgcgacaagaagttgtgattgggggtttcact
gagccgcgtggatcccgtaaaaaatttggagcgctattagttggcgtttatgatgatcaa
ggagagctacattatgttggacatgtgggagggggatttaccgacgaattgttggaggat
gtttataagcagctattgccattgagtcaaaaaaaatcgcctttcaaaaatatacctaaa
cccaatatgcctgtgacctggattaaacctaaacttgtatgtgaagtttcatttgctgaa
tggacaaaggatgacattatgcgacagcctatttttcgaggcctaagaatagataagaac
cctaaggaagttaaaaaggaaatcccaacagccagtgaggaaaaaaaagggagaacaagt
aaacgacaagaattggagctaaccaatttagataagctgtattggcccaaggaaaaatat
accaaaggggatctcattgcgtattatcaaaaagtagctccttatctattgccttacctt
agaaatcgccccattactttacaccgttttcctgatggaattgagggcaaagacttttac
caaaaaaatatagatttttctcaccccgattggttgaaaacatttcctgttcagcacgag
gggaaagtggatcattatctcatgatttcagatctacgcagcttgctttatgctgtgaat
cttggatccattgatttgcatccttttacatcgcgttgcaaaaatttggaaaaaccggat
tattgtattatcgatttggatcctcatgatatcgcatttgaaaaagtgatagaaattgcc
agtgcgacacacgagctattagaaagagcgaagattaaaaactactgcaaaacatcgggt
ggaaaaggactgcatatttttatccctttgcatgcgaagtatgactatgaacaatccaag
gaatttgcccatgtgattgcgctatgtatacacaagcaatttcctacaatcacttctgtc
gagagaagtcctcaaagcaggccaaaaaaaatttacttggattatctacaaaaccgtgct
ttgcaaactattgtggctccctattcagtgcgtccacgacctggtgcacttgtttctacg
ccccttttgtgggaagaggtaaaaccgggtttagatccaaaagattttgatatacacacc
attttaaaacgtctcgataaaatgggggatatctttaagccaattttggggggtggtgtc
aacatgcagacagccttaaaccgtttaaaaaagatgttcatttaa
DBGET
integrated database retrieval system
