Pseudoalteromonas viridis: J5X90_10050
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Entry
J5X90_10050 CDS
T07232
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
pvb
Pseudoalteromonas viridis
Pathway
pvb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5X90_10050 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvb03400
]
J5X90_10050 (uvrB)
DNA repair and recombination proteins [BR:
pvb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5X90_10050 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J5X90_10050 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_5
Kinesin
AAA_30
UB2H
DUF87
AAA
SLFN-g3_helicase
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QTL33930
LinkDB
All DBs
Position
1:2292793..2294805
Genome browser
AA seq
670 aa
AA seq
DB search
MSDVFDLVSEFSPSGDQPTAIAQLCDGLEAGLAHQTLLGATGTGKTFTMANIIHTLNRPT
IIMAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVVASDTFIEKDASINEHIE
QMRLSATKALLERRDTIIVASVSAIYGLGDPDSYMKMMLLLKVGETMEQRAMLRRLAELQ
YTRNDMDFSRGTYRVRGEVIDIFPAESDTYAIRVEMFDEEIERISMFDPLTGAVEKHLVR
ATIYPKTHYVTPREKILDAIENIKLELKERRNKLLADNRLVEEQRVAQRTQYDIEMMTEL
GYCSGIENYSRYLSGRAPGEPPPTLLDYLPDDALMIIDESHVTVSQIGAMYKGDRSRKEN
LVEYGFRLPSAMDNRPLKFEEFEAIAPQTIYVSATPGDYELDRSSGEVAEQVIRPTGLLD
PELEVRPVATQVDDLLSEIYRRVELQERVLVTTLTKRMAEDLTDYLTDHDVRVRYLHSDI
DTVERMEIIRDLRKGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTRSLIQTIG
RAARHINGKAILYGDVITKSMRKAIDETERRRAIQHAYNEKHGLKPQALVKKITDVMDLG
EEVSAEQAAAASKAARKLSAAKQNQSVTDLTEQIKQLEAQMMQYARELEFEKAAAIRDEV
HLLQQQLLKS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgtctttgacctggtgtcagaattttcgcccagtggcgatcagcccacggct
atcgcacaattgtgcgatgggctggaagccggtctggcgcatcagaccttactgggcgcc
accggtacaggtaaaacctttaccatggccaatattattcatacgttaaaccggccaacc
attatcatggcgcacaataaaacgctggctgcacagttatacggagagatgaaagagttt
ttccccaataacgcagtggaatattttgtttcttactatgattattatcagcccgaagct
tatgtggttgccagcgacacctttattgaaaaagacgcctcaatcaatgagcatattgag
cagatgcgtttgtctgcgacaaaggctttgctggagcgccgggataccatcatagttgcg
tctgtatctgccatttatggtttgggcgaccccgactcttacatgaagatgatgctgttg
cttaaagtgggtgaaaccatggagcagcgggccatgctcagacgcctggctgaactgcaa
tatactcgcaatgatatggactttagtcgcggtacctatcgggtaaggggagaggtgatc
gacatcttcccggcagaatcggatacttatgctatccgggtggaaatgttcgatgaagaa
atcgagcgcatcagtatgtttgatcccctgaccggcgcggtcgaaaagcacttagtacgt
gccaccatttaccccaaaactcactatgttacgccgcgcgaaaaaatcctcgacgcgata
gaaaacatcaaactggaacttaaagagcgccgcaacaagttactggccgacaaccgcctg
gtcgaagagcagcgggtggcgcagcgcacgcaatacgacattgaaatgatgaccgagctg
ggttattgctcgggcattgaaaactatagccgttatttgtcaggtcgtgcaccgggagag
ccgccgccaacattactggattacttgccagatgatgcactgatgatcatagatgaatct
cacgtgactgtgtcgcagataggcgccatgtacaagggcgaccgcagtcgtaaagaaaac
ctggtggaatacggcttcagattaccgtctgcgatggacaaccggcccttgaaatttgaa
gagtttgaagcgattgcgccacaaaccatctatgtgtctgctacaccaggcgactatgag
ttggatcgctcgagtggcgaggtcgccgagcaggttattcgcccgacagggctgcttgat
cccgagctggaagtgcgccctgttgccactcaggtcgatgacttgctatctgaaatttac
cgccgggttgagctgcaggagcgggtgctggtgaccacgctgacgaaacgcatggctgaa
gacctgaccgattatctcactgatcatgatgttcgggtacgctatctacattcggatatt
gatactgtggagcggatggaaattatccgcgatctgcgcaaaggcgtgtttgacgtgttg
gtcggcatcaacctgttacgtgaaggactcgacatgcccgaggtgtcgctggttgctatt
ctggatgcggataaggaaggctttttacgctcgacccgttcattgatccagaccattggc
cgggcagcccgacacattaatggtaaagctattctgtatggtgatgtgatcactaaatct
atgcgaaaggccattgatgaaacggagcgacgccgggctattcagcatgcctacaatgag
aaacacggtctgaaaccgcaggctctggttaagaagatcaccgatgtgatggacctgggc
gaggaagtatcggctgaacaggctgcagcggcatcgaaagcggcgagaaagctatcggct
gctaagcagaatcaaagtgtgactgacctgaccgagcagataaaacagcttgaggcgcag
atgatgcaatatgcccgagagttagagtttgaaaaagcggcagctattcgggatgaggta
catctattgcagcagcaattgttaaagagttaa
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