KEGG   Panicum virgatum (switchgrass): 120641920
Entry
120641920         CDS       T07260                                 
Name
(RefSeq) UBP1-associated protein 2B-like
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120641920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvir03019]
    120641920
   03041 Spliceosome [BR:pvir03041]
    120641920
Messenger RNA biogenesis [BR:pvir03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     120641920
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120641920
Spliceosome [BR:pvir03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    120641920
SSDB
Motif
Pfam: RRM_1 RRM_7 Cut8
Other DBs
NCBI-GeneID: 120641920
NCBI-ProteinID: XP_039774168
LinkDB
Position
7K:complement(48959985..48964380)
AA seq 529 aa
MAPKKRKADPAESAAAAEPAAGNRSQEPASSENKPRGTIYFPITDDPEPTASAEEDEDEV
AIDDEGEAEDIGKLLEPLSREQLVSLLRTAAEASPVTMAAVRRAAEADPASRKLFVHGLG
WGAGADDLRSAFSRFGELEDCRVISDKQSGRSKGYGFVLFRSRRAALRALRRPQLQIGGR
LAFCHLAASGPAPPASQSQNPTSNANTNTNTNSNSNAGTTGNASGSSSSQPDNMPRKIFV
GNVHADVDVDRLFEYFSQFGEIEEGPLGFDKNTGKPKGFALFVYKSVESARRALEDPVKN
FDGKMLNVQKAIDGRTKGSSGTNANANSNAATASAAAAAQMTAPATAAISPYDASAYGTT
AVTDLGFAQQAAMLGLGAQQQAFAQPNAMLAMIAAMQNPAALGMTPAMLAAMNPAFAAAA
LGAGGQQAHTAGLTGFGAQGFGTQAFGAGGATFPNAVGVQAAAAAYQGAGAPPGYQGPPG
FQVGQATTQTSTAAAAAAAASAAGYQAGAAGQGQVPGAQIGGTGFQGGY
NT seq 1590 nt   +upstreamnt  +downstreamnt
atggcgccgaagaagcgaaaagccgatccggccgagtccgccgccgccgcggagccagcc
gccgggaaccgcagccaggaaccggcgtcctccgagaacaagccccgcggcaccatctac
ttccccatcaccgacgacccggagcccaccgcctccgccgaggaggacgaggacgaggtc
gccatcgacgatgagggcgaggcggaggacatcgggaagctcctcgagccgctgtcgcgg
gagcagctcgtgtcgctactccgcacggccgcggaggcgagccccgtcacgatggcggcc
gtgcgccgcgccgcggaggccgaccccgcgagcaggaagctcttcgtccacggcctcggg
tggggcgccggcgccgacgacctccgttccgccttctcacgcttcggcgagctcgaggac
tgccgcgtcatctccgacaagcagtcgggcagatccaagggctacgggttcgtcctcttc
cgctcccgccgcgctgcgctccgcgccctccgccgcccccagctccaaatcggaggtcgt
cttgctttctgccacctcgccgcctcaggtcccgcacccccagcctctcagtctcagaac
cctacctccaacgccaacaccaacaccaacaccaattccaactccaacgccggtaccacc
ggcaatgcttctggctcctcatcctcgcaacccgataacatgccacgcaagatatttgtt
ggtaatgtgcatgctgatgtggacgtcgaccgcctatttgagtacttctcgcagtttggt
gagattgaggaggggcccttgggctttgacaagaacactggcaaacctaagggatttgca
ttgtttgtttacaagtctgtggagagtgcccgccgtgcattggaggacccagtgaagaat
tttgatggcaagatgctgaatgtgcagaaagctatagatgggaggaccaagggctcatct
gggacaaatgcaaatgctaattctaatgccgccactgcctctgcggccgcagccgcacaa
atgactgctcctgccactgctgccattagcccatatgatgcatcagcatatggtactact
gctgttactgatttgggttttgcacaacaagctgctatgctgggattaggtgcacaacaa
caggcatttgcgcagcccaatgcaatgcttgccatgatagcggcaatgcagaacccagcc
gcgctggggatgacaccagccatgcttgcagctatgaacccggcctttgctgctgctgca
ctgggtgctggggggcagcaggcacacacagctggtcttacaggttttggagctcaggga
tttgggacacaggcatttggagctggaggtgccactttcccaaatgcagtgggtgttcaa
gctgctgctgctgcatatcaaggagctggagctccccctggttatcaagggccacctggg
tttcaggttggccaagcaactacccagactagtactgcagcagctgcggccgccgccgct
agtgctgctggttatcaggctggggctgctgggcagggccaagtgcctggtgctcagatc
gggggcactggttttcagggtggatactga

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