Panicum virgatum (switchgrass): 120682340
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Entry
120682340 CDS
T07260
Name
(RefSeq) ubiquitin C-terminal hydrolase 22-like isoform X1
KO
K11366
ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:
3.4.19.12
]
Organism
pvir
Panicum virgatum (switchgrass)
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pvir01002
]
120682340
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120682340
04121 Ubiquitin system [BR:
pvir04121
]
120682340
03036 Chromosome and associated proteins [BR:
pvir03036
]
120682340
Enzymes [BR:
pvir01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120682340
Peptidases and inhibitors [BR:
pvir01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120682340
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120682340
Ubiquitin system [BR:
pvir04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120682340
Chromosome and associated proteins [BR:
pvir03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
120682340
SLIK complex
120682340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf-UBP
TF_Zn_Ribbon
DUF6604
Motif
Other DBs
NCBI-GeneID:
120682340
NCBI-ProteinID:
XP_039820119
LinkDB
All DBs
Position
7N:complement(47680716..47684385)
Genome browser
AA seq
561 aa
AA seq
DB search
MSTPSAPPPCPHLAAHRLSSRPLRFLRRCLRVRPLGRPEIRRDPRELPRCSPCAAASPSQ
SPRLYACLSCAAVFCPSHAASHASASAGPGHQIAVDVDRAELFCAACGDQVYDPDFDHAV
FLAQSSSLLPSTSSTSPSPAPRKRRRVDYRAWAPDPAEFALMSSADPTTSASAAAPAGLR
GLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRFLCPRRTPVRHRATEADAAKVACLA
CDLDEIYSAAFSGERMPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENIKDD
QHKSHAQGHGDCCIAHRVFSGILRSDVTCTSCGFTSTTFEPCMDISLDLDIGDNTPFGVA
NTKPHVRNGERGLAGMNSKVSTLMRCLERFTRAERLDAEQKFFCERCDERQESLKQMSIR
RLPLVSCFHIKRFEHSAVKKVSRKVDHCLQFPFSLDMAPYLSSSILRSRYGNRIFPAEAS
DADAVSELSSEFEIFAVITHSGKLEAGHYVTYLRLNNHWYKCDDAWVTRVEEHTVRTSQA
YMLFYVQKTLYYKACERAAAV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccgtcggccccgccgccctgcccgcacctcgccgcgcaccgcctgtcctcg
cgcccgctgcgcttcctccgccgctgcctccgcgtgcgcccgctcggccgccccgagatc
cggcgggacccgcgcgagctcccgcgctgctcgccctgcgccgccgcgtccccctcccag
tccccgcgcctctacgcctgcctctcctgcgccgccgtcttctgcccctcccacgccgcc
tcgcacgcctccgcctccgcgggccccggccaccagatcgccgtcgacgtcgaccgcgcc
gagctcttctgcgccgcctgcggggaccaggtctacgatcccgatttcgaccacgccgtc
ttcctcgcccaatcctcctcgctcctcccctccacctcctccacctcgccctccccggca
ccacggaagcgccggcgcgtggattaccgcgcatgggcgccagatccggccgaattcgcg
ctcatgagctccgcggaccccaccacctccgcgtccgccgccgcgcctgccgggctgcgc
gggctcaacaacctcggcaacacctgcttcatgaactccgtgctccaggcgctcctccac
gcgcccccgctccggaactacttcctcggcgatcggcacaaccggttcctctgcccgcgc
cgcacgcccgtcagacaccgtgccacggaggccgacgccgccaaggtcgcgtgcctcgcg
tgcgatctcgacgagatctactccgcggcattctccggggagcgcatgccatacagcccc
gccaagtttctatatagttggtggcagcatgcatcaaacctcgcaagctacgagcaacag
gatgcacatgaattttttatctccatccttgaccatatccatgaaaatataaaggatgat
cagcacaagtcacatgcccaaggccatggggactgttgcattgcccacagagtattttct
ggtatcctgaggtcagatgtcacctgcacaagctgtgggttcacatccacaacttttgag
ccctgtatggacatttccttggacctggatattggagataacactccttttggtgttgca
aacacaaagccacatgtgcgcaatggggaacggggcttggctggcatgaattccaaggta
tcaactctaatgagatgtttggagcggtttacaagggctgagagacttgatgctgagcaa
aaattcttctgtgaacgctgcgatgagaggcaagagtccctgaagcaaatgtccattcgc
aggcttccattagtttcctgctttcacataaagagatttgagcactcggcggtgaaaaag
gtgtcaaggaaagttgatcactgtttgcagttccccttttcccttgacatggcaccttac
ctatcttcatctattcttagaagtagatatggaaaccgtatatttccagcagaagctagt
gatgcagatgcagtttcagaattgtcatcagaattcgagatatttgcagtgatcacacat
agtggtaaactagaagctggccattatgtgacatatctgaggttaaacaatcactggtat
aaatgtgatgatgcctgggtaacgagagttgaggagcatactgtcagaacttctcaggca
tacatgctcttttatgtgcagaagacgctatattacaaagcttgtgaaagagcagctgca
gtctga
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integrated database retrieval system
