Panicum virgatum (switchgrass): 120687368
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Entry
120687368 CDS
T07260
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120687368
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvir03021
]
120687368
03019 Messenger RNA biogenesis [BR:
pvir03019
]
120687368
Transcription machinery [BR:
pvir03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120687368
Messenger RNA biogenesis [BR:
pvir03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120687368
U7-dependent histone pre-mRNA processing factors
120687368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
120687368
NCBI-ProteinID:
XP_039825272
LinkDB
All DBs
Position
9N:779845..784196
Genome browser
AA seq
695 aa
AA seq
DB search
MASVAAPSSSLAGKRPASGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPA
YSGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL
LTDYVKVSKVSVEDMLYNENDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFM
VDIAGVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGIQQHQPRIVREKRFTEVI
HNTVSQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYI
NSMNERIRNQFAQSNPFVFKHIESLNSIENFHDVGPSVVMASPGGLQSGLSRQLFDKWCT
DKKNACVIPGYVVEGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSNFL
DELRPPNIILVHGEANEMSRLKQKLISQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTIGR
LAENMPEGGESSGGLLVKKGFTYQIMAPEDLRVFTQLSTANITQRIAVPYSGSFEVIKYR
LKQIYESVESATEESDVPTLIVHERVTVRLESESYVTLQWSSDPISDMVSDSVVAVVLNI
GREGPKLVPVEEAAKTKEDTERVALKVVYSLMASLFGDVKVGEEGEFVISVDGDVAHLDG
RSGDVECENATLKERIKTAFRRIQGAVRPIPLSAS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgtcgccgcgccgagcagctcgctggccggaaagcgcccggcctccggcggg
cgggagggcgaccagatggtcatcacgccgctgggcgctggcagcgaggtcggccgctcc
tgcgtccacatgaccttcaagggccgcaccgtcctcttcgactgcggcatccacccggcc
tactccggcatggcggcgctgccctacttcgacgagatcgatccgtccaccatagacgtc
ctcctcatcacccactttcacttggaccatgccgcctcgctgccctatttcctggagaag
actacgttcaagggcagggtgtttatgacccatgccacaaaggctatttacaagctgctg
cttacggattatgtcaaagtcagcaaagtttccgtggaggatatgctgtataatgagaat
gacattgctcgctctatggagaaaattgaggttattgatttccaccagacattggaagtt
aatggcatacgtttctggtgctacactgctggccatgtacttggtgctgccatgttcatg
gtggatatcgctggtgtgcgcattctttacactggtgactactcccgtgaagaagaccgc
cacctacgagctgctgagctcccacagttctccccagatatctgcattattgagtcaact
tatggcatacaacaacatcagcccaggatcgtacgcgagaagcgctttactgaggtcatc
cacaatactgtttcgcaggggggtcgtgttcttatcccagcatttgctcttggcagagca
caagaactgttacttatccttgatgagtattggtccaagcacccagagctccataagatt
ccaatctattatgcctcccctcttgcaaagaggtgcatggctgtctaccagacatacata
aactccatgaatgaaaggatacggaaccagtttgcgcagtccaatccctttgttttcaag
catatcgagtccttgaatagcattgagaactttcatgatgtaggtccttcagtggtgatg
gctagtccaggtggtcttcagagcggtctctctaggcagctttttgataagtggtgcacg
gataagaagaatgcttgtgttattccaggttatgttgtggagggcacccttgcaaagacc
attatcaacgagccaagagaagtgacgctagctaatgggctcactgctcctcttcatatg
caggttcactatatatctttctcagctcatgctgatttccctcagacaagcaactttttg
gatgaacttcggccacccaacattattcttgtacatggagaagcaaatgaaatgtcaagg
cttaaacagaaacttatttctcagtttgatggaacaaacaccaaaattgtgtctcccaag
aactgccaatcagtggagatgtatttcacttgtgagaaaatggccaagactattggcagg
ctggcagagaacatgccagaaggtggagagtcttcgggtggcttacttgtgaaaaaagga
ttcacatatcagattatggctcctgaagatctccgagtgttcacacagttatctacagct
aacatcactcaacgcattgcggttccttattctggttcttttgaagtcataaagtacagg
ctgaagcaaatatacgagagcgtggagtcagcaactgaagaatctgatgttccaacactt
attgtgcatgaaagagtgacagttcgcctagaatcagaaagctatgttactctacaatgg
tcatcggatcccattagcgacatggtttctgattctgtggtggctgtggtcttgaacata
ggccgtgaaggtccaaaacttgttccagttgaagaagcagcgaagaccaaggaagatact
gaaagggtagcactaaaggtagtttattctctgatggcgtcactgtttggtgatgttaaa
gttggagaggaaggggaatttgtcatatccgtcgatggagatgtggcacacttggatggg
aggagtggtgatgttgaatgtgaaaatgcaacactgaaagaacggatcaagactgctttc
cgtcgcatacagggtgctgtgagaccaatcccgctttcagcctcttga
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