Panicum virgatum (switchgrass): 120703107
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Entry
120703107 CDS
T07260
Name
(RefSeq) tryptophan synthase alpha chain-like isoform X1
KO
K13222
indole-3-glycerol-phosphate lyase [EC:
4.1.2.8
]
Organism
pvir
Panicum virgatum (switchgrass)
Pathway
pvir00402
Benzoxazinoid biosynthesis
pvir00999
Biosynthesis of various plant secondary metabolites
pvir01100
Metabolic pathways
pvir01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
pvir00001
]
09100 Metabolism
09110 Biosynthesis of other secondary metabolites
00402 Benzoxazinoid biosynthesis
120703107
00999 Biosynthesis of various plant secondary metabolites
120703107
Enzymes [BR:
pvir01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.2 Aldehyde-lyases
4.1.2.8 indole-3-glycerol-phosphate lyase
120703107
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Motif
Pfam:
Trp_syntA
His_biosynth
PcrB
FMN_dh
ThiG
BtpA
Ribul_P_3_epim
IGPS
NanE
NMO
Spore_YtrH
Motif
Other DBs
NCBI-GeneID:
120703107
NCBI-ProteinID:
XP_039843055
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Position
4K:complement(11448371..11458042)
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AA seq
347 aa
AA seq
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MAFTIKIKAASLTSNSTFSPAVHQPSSLITTRAASVAKMPAGRRKAAAIIRAVAAVAPPP
DPTPAKPAGKRCLSVSQTMSRIKAQGKTAFIPYITAGDPDLATTAEALRLLDACGADVIE
LGMPFSDPYADGPVIQASAARALASGTTTDGVLAMLKEVTPELSCPVVLFSYINPIIRWG
LAEFAAAAKEAGVDGLIVPDLPYAGTCSLRSEAMKNNLELVLLTTPATPEERMKEITRAS
EGFIYLVSVNGVTGPRANVSTRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAEWGADG
VIIGSAMVRQLGEAISSQEGLKRLEDYARSMKNALPRSQTSTRGPDN
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggctttcacgatcaagatcaaagctgcgtcgttgacctccaactcgactttttccccg
gcagttcatcagccatcgtcgctcatcacgacgcgggcggcgtcggttgcgaagatgcca
gctgggcggaggaaggctgcggcgatcatcagggcggtcgccgcggtggctccgccgcct
gacccgacgccggccaaacccgcgggcaagcggtgcctgtcggtgtcgcagaccatgtcc
aggatcaaggcgcagggcaagacggcgttcatcccgtacatcaccgccggcgaccccgac
ctggccacgacggcggaggcgttgcggctcctggacgcctgcggcgccgatgtcatcgag
ctcggcatgcccttctccgacccttacgctgatgggcccgtcatccaggcatcggcggcg
cgcgcgctggcgagcggcacgacgacagacggtgtgctggcgatgctcaaggaggtgacg
ccggagctgtcgtgcccggtggtgctcttctcctacatcaaccccatcatccggtggggg
ctggctgaattcgctgctgccgccaaagaagccggtgtagatggtcttatagtccccgac
ctcccttatgctggcacttgttccctcaggagtgaagccatgaagaacaacctcgagctg
gtgctgctcacaacaccagctacgccggaagagaggatgaaggaaatcacaagagcttca
gaaggttttatttaccttgtgagcgtcaatggcgttacaggtccccgcgcaaatgtgagc
acacgtgtcgaatctctcattcaagaggttaaaaaggtcactaacaaacctgtggctgtt
ggatttggcatatcgaaacctgagcacgtaaagcagattgcggagtggggagctgatggg
gtgataattggcagtgcaatggtgagacagttgggtgaggcaatatcttcacaagaaggg
ctgaaacggctggaggattatgctaggagcatgaagaacgcattgccacgaagccagact
agtactagagggccagataattaa
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