Penaeus vannamei (Pacific white shrimp): 113827869
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Entry
113827869 CDS
T06111
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
pvm
Penaeus vannamei (Pacific white shrimp)
Pathway
pvm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113827869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvm03019
]
113827869
03032 DNA replication proteins [BR:
pvm03032
]
113827869
Messenger RNA biogenesis [BR:
pvm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
113827869
mRNA cycle factors
Common to processing body (P body) and stress granule
113827869
DNA replication proteins [BR:
pvm03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
113827869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
IMD
Ufd2P_core
Motif
Other DBs
NCBI-GeneID:
113827869
NCBI-ProteinID:
XP_027236606
LinkDB
All DBs
Position
Unknown
AA seq
953 aa
AA seq
DB search
MRKSTLTTGERADNLEQVKKLTKHVSDCVRRANAALGEAGVVAALFSPQAVAVRARLREA
CEKVITMAPGPQARRMEEILWRKVYYEPLTSAKKIRKGTAWSSTEACWVYGHLWTGLAYY
HQLLHTLAQAHHLDRGLADLLPYPAQDEDENISASPGENGIDSVHRCLTCLGDLTRYMLD
LPSPPPYHLPVRYYLQALHYHREGGLTHSNLATVYTNSDQPLLAAAHYLRALTCEKAFEA
AEGNLKRLLDKSRAFYETGIDNGINKTAADHQKMFLHTVLTLVSFLINNRATEEVARLCQ
DVLVQLGKVLETYDDGDNDVSERSPSPSATPNGHTPTVQNGCDSPVEPAKKSPLFSLTPE
SVVAFCAVLVLCTQRLKKQGLSHTSMAQALLVSVLLTLISHVTSRLEQRISLVDPSFLTT
LLPDSEKKTETDIKENETDGQKGNKENFESIDKVEGEVAKKKKKKGRNNRLRNLRRRRKV
NDDSPVLSDDDTGSDDSASDAEDNDREADDDEMSSEEEEEEEEEELDLSQLCSSEDDDSD
EDVKIESDQEWEGLSASEHLELIGQEGMLSAVYVLCDWLKKEDEVIQLCIKTADSLWTAI
AKLLNLLRVDFDQLKSNSNIVRHDVIKLVQESVSGSTDSQSPMLEALCKTPLPEDLMLHT
LISSYLSASHKSLNLKSSELVLLRIGRLAVFGRELNKRQDAPLWHNTDTGLYTFSMEGVI
VEESKNKEVGQETTSRESSASPSEDDMLSVPPAKKESKRLAGMQSLTAQWLQHEVRNLEE
RTARRATLGLYLVPDASVLINHLPAIKMLLSKPTHMIIIPQTVIDLLDQQKRESLGARDA
IRWLEIKFRHGSRFIRSQRPHERTHLPLIKYPKRKDKEAWEWYQILECCHYLSAQVQQNS
ASVKAATVTLLTGEHQLPNSSFSHSGLAHAAGAVLEHIEEFMRKWQTSTKGHS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaatcaacactgaccacaggggagagggctgacaacctagaacaggtgaagaaa
ctcaccaaacatgtgagtgattgtgttcgtcgagcaaatgcagctctgggtgaggcaggg
gttgtggcggccctcttcagtcctcaggctgtagcagtgcgggccagactgagggaagcg
tgtgaaaaggtgatcacgatggcgccaggacctcaagcacgtcgcatggaagagattctt
tggcggaaagtctactacgagcctttgacttctgcaaagaaaatcaggaagggcacagca
tggtcaagcacagaagcatgctgggtttatggccatttatggactggtctagcatactac
catcagctgctgcatacattagctcaggcccaccacttagaccgaggcttggctgatcta
ctcccatatccggcccaggatgaggatgaaaatatttcggcttcccctggagaaaacgga
attgactctgttcatcgctgcctcacctgcttgggggatctgacccgttacatgctagac
ctcccatcgccaccaccttaccatctaccagttcgctactatctgcaggcccttcattac
caccgggaaggaggccttacacacagtaacttagcaacagtgtacaccaacagtgatcag
cctctgcttgctgcagcacactatctaagagcattaacatgtgaaaaagcttttgaggca
gctgaaggaaatctaaaacggctcttagacaaaagccgtgcattttatgagacaggaatt
gacaacggtattaataaaacagctgcagaccaccagaagatgttcttacatactgttctc
acactcgtctcattcctcattaacaacagagctactgaggaagttgccaggctttgtcag
gatgttcttgttcagcttggtaaagtcttagagacctatgatgatggtgacaacgatgtc
tcagagaggtcaccttctccatcagcaacaccaaatggtcacactccaacagtccagaat
ggttgcgactctccagtggaaccagccaagaagtctcctctcttcagtctgacacctgaa
tcagtggtggccttctgtgcagtactagttttatgtactcaaaggctgaagaagcaaggg
ttgtctcacacaagcatggctcaagctctcctggtgtctgttttgctgaccctcatctcc
catgttacaagccgtttagagcagcgcatttcgctggtggatccgtctttcttgacaaca
ctcttgcctgactcggaaaagaagacagagacggatataaaggaaaatgaaactgatgga
cagaagggaaataaggaaaattttgaaagcattgataaagttgaaggagaagttgccaag
aaaaaaaagaaaaagggacgaaataataggctgagaaatttgaggaggagaaggaaggtg
aatgatgacagtccagttctcagtgatgatgatactggctcagatgattctgcaagtgat
gctgaagataatgatagagaagcagatgatgatgaaatgtcaagtgaggaagaggaggaa
gaggaagaagaagaacttgatctctcacagctgtgctcctcagaagatgatgattcagac
gaagatgtaaagattgagtctgaccaagaatgggaaggccttagtgcaagtgagcactta
gaattgattggtcaggaaggcatgctgtcggctgtatatgtgctttgtgattggctgaag
aaggaagatgaagtcatacaactttgcattaagacagcagattctttatggacagccatt
gccaagttgttgaatttattgagggttgactttgaccagctaaaaagcaattcaaatatt
gtgcggcacgatgtcattaaacttgtgcaagaatctgtctcggggtcgacggattcccaa
agccctatgctggaggcactttgcaagacgcctttacctgaggacctaatgcttcataca
cttatatcttcatatctctctgcatcacacaagtcactcaacttgaagtcatctgaactt
gttcttttgagaattggtcgccttgctgtcttcgggagggagctgaacaagaggcaggat
gctcctctgtggcacaacacagacacggggctctacactttttcaatggaaggtgttatt
gttgaagagagcaagaacaaagaagttggacaggagacaaccagcagggaatcttcggcc
tccccatcagaagacgacatgttaagtgtcccccctgccaagaaagaatcaaagcgactt
gctggaatgcagagtctcacagcgcagtggcttcaacacgaagtacgtaacttagaagag
cggacagcaagacgtgctactctcgggttgtaccttgttccagatgcaagtgtgctcatc
aaccatcttcctgctatcaagatgctactctcaaaacccacccatatgatcatcatacct
caaacagttattgatttactggatcagcaaaagcgcgaaagcttgggcgctcgagatgcc
attcgctggttagagatcaagttccgtcacggttcccgatttatccgctcacagaggcct
catgaaaggactcaccttccgctcattaaatacccaaagcgcaaagacaaagaagcttgg
gaatggtatcagattctggaatgctgtcattacctgagtgctcaagtccagcagaattca
gccagtgtgaaggctgccacagtgacgctcttgacaggagagcatcagttacccaattcc
tccttctctcactctggtcttgcccatgctgctggtgcagttttggagcatatagaggag
tttatgcggaaatggcaaacatccactaaagggcatagctga
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