Pseudomonas wayambapalatensis: HU734_015085
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Entry
HU734_015085 CDS
T08016
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pwy
Pseudomonas wayambapalatensis
Pathway
pwy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pwy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU734_015085 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwy03400
]
HU734_015085 (ligD)
Enzymes [BR:
pwy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU734_015085 (ligD)
DNA repair and recombination proteins [BR:
pwy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU734_015085 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
ParE_toxin
RNA_ligase
SL4P
Motif
Other DBs
NCBI-ProteinID:
QXI41608
LinkDB
All DBs
Position
3327229..3329700
Genome browser
AA seq
823 aa
AA seq
DB search
MAKPLQEYHRKRDFNATSEPLGKHAKPRSAHALQYCIQKHDASHLHYDLRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGIWEPEGDPRQA
YAKGKLRFRLQGEKLSGVWNLFRTQLAGKKEQWMLVKSGDGRARSEAEYSIVEALPDSVL
SERSLPPRRPAKTTSASPRKHKARAKALPDKLQPQLATLVDSPPSGDWRYEVKFDGYRIL
ARIDGDDVRLFTRNGHDWSAKMPRQVEALKALGLDAAWLDGEMVVVDDNGVADFQALQNA
FDTEHDERITYYLFDLPWLGSEDLRELPLQARRATLARLLEDNASPVLRYSADFEEPVDS
LLDSACRLELEGLIGKRADSPYVGRRSSDWVKLKCKQRQEFVIVGYTDPKGSRHGFGALL
LALHDHDSGQLRYVGKVGTGFSAATLDSILARLKPLRTAKAPLPSPPTGAEARGVHWLKP
HLLAEVAYAQMTREGIVRHAVFHGLRDDKPATAIDLEKAMPAKRAAQPQPKAPGSLRLTH
PDRVVDATIGATKRQVAEYYAQVAEWLLPQLKDRPVALVRAPDGLAGELFFQKNAGQLHI
PKVLSYSKAQAGQAAMVLNRADSLLGAVQMNTLELHTWNATNKDFDKPDRFVLDLDPDPA
LPWKAMLEATQLTLTLLDELGLKVFLKTSGGKGIHLVVPLTRRAGWDEVKDFSHALVEHM
AALFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELSQL
KGADQWNIGNLHERLAQVDDPWSEMARTRQSITARMRKQLGIE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccatcgcaagcgcgacttcaacgccacctccgaaccg
ctaggcaaacacgccaagccacgctcggcgcacgcgctgcagtactgcatccagaaacac
gacgccagccacctgcactacgacttgcgcctggaactcgacggcaccttgaaaagctgg
gcaatccccaaggggccctccctggaccccaaggtccggcgcctggcagtgcatgtcgag
gatcacccgctggactacgccaacttcgaagggcacatcccggagggtcactacggcgct
ggcgatgtgatcgtctgggaccggggcatctgggaacccgaaggcgacccgcgtcaagcc
tatgccaagggcaagctgcgctttcgcctgcagggcgagaaactgtcgggggtctggaac
ctgttccgcacccagctggccggcaagaaggagcaatggatgctggtcaagtccggtgac
gggcgggcacgcagcgaagccgaatacagcatcgtcgaagccctgccggacagcgtcctc
agcgagcgcagtctgccgccaaggcgtccggccaagacaacctccgccagcccgcgcaag
cacaaggcccgcgccaaagccctgcccgacaagctccagccgcaactggccaccttggtc
gattccccccccagcggcgactggcgctatgaagtcaagtttgatggctaccgcatcctc
gcgcgcatcgacggcgacgacgtgcgcctgttcacccgcaatggccacgactggagtgcg
aagatgccccgtcaggtcgaggcgctcaaggcgctcgggctcgacgccgcgtggctggat
ggcgaaatggtggtggtcgatgacaacggcgtcgccgatttccaggcgttgcagaatgcc
ttcgacaccgagcacgacgaacgcatcacctattacctgttcgacctgccctggctgggg
agcgaggacctgcgcgaactgccgctacaggcacgtcgcgccaccttggcccggctgctg
gaagacaacgcatcgccggtgctcaggtactccgcagacttcgaggagccggtcgactcg
ctgctcgacagcgcctgtcgcctggagctggagggcctgatcggcaaacgcgccgacagc
ccctacgtgggccgacgcagcagcgactgggtcaagctcaagtgcaagcagcgccaggaa
ttcgtgatcgtcggctacaccgaccccaagggcagccgtcacggcttcggcgccctgctg
ctggccctgcatgaccacgatagcggccagttgcgctacgtcggcaaggtcggcaccggc
ttcagcgccgccaccctggacagcatcctcgctcgcctcaagccgctgcggaccgccaaa
gcgccgttgcccagcccacccaccggcgccgaagcccgaggcgtgcactggctcaagcct
catctgctggccgaagtggcctatgcccagatgacccgcgaaggcatcgtgcgccacgcg
gtgttccacggcctgcgcgacgacaagcccgccaccgccatcgacctggagaaagcgatg
cccgccaagcgcgcagcacagccacaaccgaaggcgccgggcagcctgcgcctgacccac
cccgaccgcgtggttgacgcaaccatcggtgcaaccaagcgccaggtcgccgagtactac
gcccaggtcgccgagtggctgctgcctcagctcaaggatcggcccgtcgccctggtccgg
gcaccggatggcctggctggcgagttgttcttccagaagaatgccggccagctgcacatt
cccaaggtgctcagctacagcaaggcccaggccggccaggcggccatggtgctcaaccgc
gccgacagcctgctcggcgcggtgcagatgaataccctcgaactgcacacctggaacgcc
accaacaaagacttcgacaagcccgaccgcttcgtgctcgacctcgacccagaccccgcg
ctgccctggaaagccatgctcgaggccacgcaactgaccctgaccctgctcgatgagctg
ggcctgaaggtgtttctcaagaccagtggcggcaaggggatacacctggtcgtgccgctg
acccggcgtgcgggctgggacgaggtaaaggatttcagccatgccttggtcgagcacatg
gccgcgctgttccctgatcgcctcagtgccgtttccggcccgaagaatcgggtcgggcgg
atcttcatcgactacctgcgcaacggcaagggcgccaccaccgtagcggcttattcgctg
cgcgctcgcgaaggcctgccggtttcggtgccgatctggcgcgaagagctgagccagctc
aaaggcgctgaccaatggaatatcggcaacctgcacgagcgtcttgcacaggtcgacgac
ccttggtccgaaatggccaggacccgccaatccatcaccgcgcgcatgcgcaagcaactg
ggaatcgagtga
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