Pseudomonas wenzhouensis: J7655_13960
Help
Entry
J7655_13960 CDS
T07852
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pwz
Pseudomonas wenzhouensis
Pathway
pwz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pwz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J7655_13960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pwz03400
]
J7655_13960 (mfd)
Enzymes [BR:
pwz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J7655_13960 (mfd)
DNA repair and recombination proteins [BR:
pwz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J7655_13960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AroM
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UFQ96408
LinkDB
All DBs
Position
3038974..3042411
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLAIAEAASNAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPIATALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSEVPY
RIDLFDDEIETLRTFDPENQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSSGITPAGIEYYLPLFFEETGTLFDYLPGDTQVFSLPGIEKAAEQFWQDARN
RYEDRRVDPERPLLPPADIFLPVEDCFARLKSWPRVVVNQDDIEAGVGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYQGRVLFCAESAGRREVLLELLARLKLKPKEVDGWPAFVES
GERLNICVAPLDEGLLLDQLALIPENPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYSGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPAVDYATFSAGFPFEE
TPDQQAAIDAVRSDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAVQQLAEGKVDIVIGTHKLLQEDVKFH
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEENKPTIKEALLRELLRGGQVYYLHNDVKTIDKCAADLAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKSMTEDAQKRLEAIAGAQDLGAGFILATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
ARLILYKRIANASDEDGLKELQVELIDRFGLLPEPTKNLMRLTLLKLQADKLGISKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALFER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctgccggccagcgccggcaaacagcaatggggcaat
ctgcccggcgccgccctctctctggcgatagccgaagcggccagcaatgccgggcgcttc
accctggtattgaccgagggcagccagagcgccgagcgcctgcaggaagaactggccttc
ttcgccccggacctgccggtgctgcatttccccgactgggaaaccctgccctacgacgtc
ttctcgccccaccaggacatcatctcccagcgtatcgccgcgctgtaccggctaccgcaa
ctgagccgcggcattctcgtagtgccgatcgcgactgccctacaccgcctggcgccgaag
cgcttcctgctgggtagcagcctggtgctggacgtgggccagaaactggatgtggagcag
atgcgcacgcgtctggaggccgccggctaccgctgcgtcgatacagtgtacgaacatggc
gagttcgccgtgcgcggcgcgctgatcgacctcttccccatgggcagcgaggtgccctac
cgcatcgatctgttcgacgacgagatcgagaccctgcgcaccttcgacccggaaaaccag
cgctcggtggacaaggtcgagtcgatccgcctgttgccggcgcgtgagtttccactggag
aaaaaagctgtcaccgatttccgcgggcgctttcgcgaacgtttcgacgtcgattttcgc
cgctgcccgatctatcaggacctgtcctcgggcatcaccccagccggcatcgagtactac
ctgccgctgttcttcgaggaaaccggcaccctgttcgactacctgccgggcgacacccag
gtgttctccctgcccggcatcgagaaggccgccgagcagttctggcaggatgcgcgcaac
cgctacgaggaccgccgggtcgaccccgagcgcccgctgctgccacctgcagacattttc
ctgccggtggaggactgcttcgcccgcctgaagagctggccgcgcgtggtggtcaaccag
gacgacatcgaagccggtgtcggccagacccgcttcgacgcgcgcgccctacccgacctg
gcaattcaggccaaggccggcgagccgctggcggcgctgcgtcgcttcatcgaggaatac
cagggccgcgtgctgttctgcgcggaatccgccggtcgccgcgaagtgctgctggaactg
ctcgcccgcctcaagctcaagccgaaggaagtcgacggctggccggcgttcgtcgaaagc
ggcgaacgcctgaatatctgcgtcgcgcctctggatgaaggcctgctgctcgaccaactg
gcgctgatcccggagaacccgctgttcggccagcgcgtgatgcagcgtcgtcgtcgcgag
aaaggccgcgaaggcggcgacaacgtgatcaagaacctcaccgaactgcgcgaaggcgcg
ccggtggtgcatatcgatcacggcgtcggccgctacctgggcctggtgaccatggagttc
gacggccaggccgctgaatttctcgccttgcagtacgccgacgaggccaagctctatgtg
ccggtagccagcctgcacctgatcgcccgctacagcggcagcgacgacgccctggcccca
ctgcaccgcctcggctcggaagtctggcaaaaggccaagcgcaaggccgccgagcaggtg
cgcgacgtcgccgccgaactgctcgacatctacgcccgccgcgccgcccgcgaaggcttc
gccttccaggacccggccgtcgactacgccaccttcagcgccggcttccccttcgaggaa
accccggatcagcaggccgccatcgacgccgtgcgcagcgacatgctcgccggcaagccc
atggatcgcctggtctgtggcgacgtcggcttcggcaagaccgaggtggccatgcgcgct
gccttcatcgccgtgcacagcggcaagcaggtggcggtgctggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtgaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcgaaggcgccgtgcagcaactggctgaa
ggcaaggtggatatcgtcatcggcacgcacaagctgctgcaggaggatgtgaaattccac
aacctgggcctggtgatcatcgacgaggaacaccgtttcggcgtgcgccagaaggagcag
ctcaaggcgctgcgcagcgaagtcgacatcctcaccctcaccgccacgccgatcccgcgc
accctgaacatggccgtggccggcatgcgtgacctgtcgatcatcgccacgccgccggcg
cgacgcctgtcggttcgcaccttcgtcatggaagagaacaagccgaccatcaaggaagcg
ctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgatgtgaagacc
atcgataaatgcgccgccgacctggccgaactggtgcccgaggcgcgcatcggcattggc
cacgggcagatgcgcgagcgcgatctcgaacaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtagcctcgaccatcatcgaaaccggcatcgacgtacccagcgccaac
accatcatcatcgagcgcgccgacaagttcggcctggcccagctgcaccaactgcgcggc
cgtgtcggtcgtagccaccaccaggcctacgcctacctgctcacaccgccgcgcaagagc
atgaccgaggatgcgcagaagcgcctggaagccatcgccggcgcgcaggatctcggcgcc
ggcttcattctcgccacgcacgatctggaaatccgtggcgccggcgaactgctcggcgac
ggccagagcgggcaaatccaggccgtcggcttcaccctgtacatggaaatgctcgagcgc
gcggtcaaggccatccagaaaggcgaacagcccaacctcgaccagccactgggcggcggc
ccggaaatcaacctgcgcgtgccggcgctgatccccgaggactacctgcccgacgtgcat
gctcgtctgattctctataagcgcatcgccaacgccagcgacgaggatggcctgaaggag
ctacaggtggagttgatcgaccgcttcggcttgctgccggagccaaccaagaacctgatg
cgcctgaccctgctcaaactgcaggccgacaagctgggcatcagcaaggtcgacgccggc
ccgcagggcgggcgcatcgagttcgccgcagagacctgcgtcgacccgctgaccctgatc
aagctgatccaggcccagccgaaacgctacaagttcgaaggcgccactgtcttcaagatc
caggtaccgatggagcgcgcggaagaacgcttcaacaccctggaagccctgttcgagcgc
ctcgcgcccaccacctga
DBGET
integrated database retrieval system
