Pyrus x bretschneideri (Chinese white pear): 103938533
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Entry
103938533 CDS
T03446
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103938533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103938533
Enzymes [BR:
pxb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103938533
Spliceosome [BR:
pxb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103938533
Complex C
U5 SnRNP specific factors
103938533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
ATP-cone
Motif
Other DBs
NCBI-GeneID:
103938533
NCBI-ProteinID:
XP_009346826
LinkDB
All DBs
Position
Unknown
AA seq
2179 aa
AA seq
DB search
MAQHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKHFGDRA
YRGRPPELDDKLKKSKKKKERDPNAEPAPVRQSKKRRLHEESVLTATEEGVYQPKTKETR
AAYEAMLSVIQQQLGGQPSSIISGAADEILAVLKNENFKNADKKKEIEKMLNPIPNTVFD
QLVSIGRLITDFQDGGDAGGSAVVNGDEALDDDVGVAVEFEENEDDDEESDLDMVQEDEE
EDDDDVAEPHQSGAMQMGGIDDDEMQEANEGMNLNVQDIDAYWLQRKISEAYEKQIDPQQ
CQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLCRNRLKIVWCTRLARAEDQDE
RKKIEEEMLQLGPDLAAIVEQLHATRASAKERQKNLEKSIREEARRLKDESGGDGDRGRR
GLVDRDADSGWLKGQAELLDLDSLAQEQSRLLVSKKCVLPDGSYRHPSKGYEEIHVPALK
PRPFSPDEKLVKISAMPEWAQPAFKGMTQLNRVQSRVYETALFKADNILLCAPTGAGKTN
VAVLTILQQFALNMNKEDGSINHSDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELS
GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
IVARTVRQIETTKDHIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVPLSQQYI
GIMVRKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALAKDTLGR
FLKEDSASREILTTHTDLVKSNDLKDLLPYGFAIHHAGLNRADRQLVEDLFADGHVQVLV
STATLAWGVNLPAHTVIIKGTQIYDPEKGAWTELSPLDVMQMLGRAGRPQFDSYGEGIII
TGHNELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACNWIGYTYLYVRML
RNPTLYGLEADVLSRDITLEERRADLIHSAATILDKSNLIKYDRKSGYFQVTDLGRIASY
YYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLLRALFEIVLKRGWAQLAEK
AMNMCKMVNKKMWSVQTPLRQFTGIANDILMKLEKKDLAWDRYYDLSSQELGELIRMPKM
GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDG
EFVLHHEYFLLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLI
LPEKYPPPTELLDLQPLPVTALRNPLYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAP
TGSGKTICAEFAVLRSHQKRSDNVMRVVYIAPIEALAKERYRDWEKKFGKGLNLRVELLT
GETTTDLKLLERGQIIISTPEKWDALSRRWKQRKHVQQVSLFIVDELHLIGGQGGPILEV
IVSRMRYIASQSENKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQG
VDLANFEARMQAMAKPTYTAIVQHAKNAKPALVYVPTRKHVRLTAVDLMTYSNADGGEKP
SFLLRSVDDIEPFIERLGDEILKGTLRSGVGYLHEGLSSLDQEIVSQLFEAGWIQVCVMS
SSMCWGVPLSAHLVVVMGTQYYDGRENVHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH
APRKEYYKKFLYEAFPVESHLHHYLHDNLNAEVVAGIIENKQDAVDYLTWTFLYRRLTQN
PNYYNLQGVTQRHLSDHLSELVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISYT
TIERFSSSLTSKTKMKGLLEILTHASEYSQLPIRPGEEEVVRRLINHQRFSFDNPKCTDP
HVKANALLQAHFARQPLGGNLALDQREVILSASRLLQAMVDVISSNGWLSLAVLAMEVSQ
MVTQGMWDRDSMLLQLPHFTKELAKRCQENPGKSIETVFDLVELDDDERRELLQMSDSQL
LDIARFCNRFPNIDMLYEVLDRDNIRAGEEITLLVTLERDLEGRTEVGPVDALRYPKAKE
EGWWLVVGDTKTNSLLAIKRVSLQRRAKVKLEFAAPTEPGEKSYILYFMCDSYLGCDQEY
DFTLDIKDAAGPDDDSGGE
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcatttgggcggcggtgcggaggcgcacgcccggttcaagcaatacgagtac
cgtgctaactcgagtttggtgctgaccaccgactctcgcccgcgtgacacgcacgagccc
accggcgagccggagtctctatggggaaagattgaccccaagcacttcggtgaccgggct
tacaggggtaggccgccggagctcgatgacaagcttaagaagtcgaagaagaagaaggag
cgggacccgaatgctgaacctgccccggttcgacagagtaaaaagcggcggcttcatgaa
gagagcgtcctcacggccactgaggaaggggtttatcagcctaagaccaaggaaaccagg
gctgcctacgaggccatgctcagcgtcattcagcaacagttgggtggccagccttcgagt
ataataagcggtgccgctgatgagattttggccgttcttaaaaacgagaactttaagaac
gctgataagaaaaaggagattgagaaaatgttgaatcctatacccaacaccgtctttgat
cagttggtttcgattgggaggttgattactgactttcaagatgggggtgatgctggaggg
tctgccgtggttaatggtgatgaagcccttgatgacgatgtgggtgttgccgttgagttt
gaagagaatgaagatgatgacgaggagagtgatcttgatatggtccaggaggacgaggaa
gaggacgacgatgatgtggctgaaccacatcagtctggggctatgcaaatgggtgggatt
gatgatgatgaaatgcaggaagcaaatgagggtatgaaccttaatgttcaggacattgat
gcatattggcttcagaggaagatatctgaagcttatgagaaacagatcgatccacaacaa
tgccagaagcttgctgaagaggtgctcaagatactcgctgaaggtgatgacagggaagtt
gaaaccaagctgttggttcaccttcagtttgacaaattcagccttattaagtttctgtgt
cgaaaccggctgaagattgtctggtgcacgcgtttggccagagccgaagatcaagatgaa
aggaagaaaattgaggaggaaatgttgcagctgggtccggatttggctgcaattgtagaa
cagttgcatgccacaagggctagtgcaaaggagaggcaaaagaacttggagaagagtatt
agagaagaggctcgcaggttgaaggatgagagtggtggagatggggacaggggtaggagg
ggccttgttgatagagacgctgacagtggttggttgaaggggcaggccgagctgcttgat
cttgacagccttgcacaagagcaaagtagattgttggtttcgaaaaagtgcgtgcttcca
gatgggtcttacagacatcccagcaagggatatgaagaaatccatgtgccggccttgaaa
ccgagaccatttagtcctgacgagaagcttgttaaaatatctgccatgccagagtgggct
cagccagctttcaaaggaatgacccagttgaacagggtacagagtagagtctatgagact
gcgcttttcaaggcggacaatatcctgttatgtgctcctactggtgctggaaaaactaat
gttgcagtgctcactatacttcagcagtttgcgctgaacatgaacaaggaggatggttcc
ataaaccacagtgattataagattgtatatgttgcacctatgaaagctcttgttgctgaa
gttgttggaaatctttctaatcgtttgaaggattatggtgtcactgtgagggagctaagt
ggtgaccagacattgactcgccaacagatcgaagaaactcaaattattgtcacaacccct
gagaagtgggatatcattacccgaaagtcgggagaccggacttacactcaactggtcaaa
cttcttatcattgatgaaattcatcttctccatgataatagaggccctgttcttgaaagt
attgtcgctagaactgttaggcagattgagaccacgaaagatcatattcggttggtgggg
ttatctgctacactccctaactacgaagatgtggcattgttcttgcgtgttgatcttaag
aagggactattttattttgataacagttacagacctgtccccctttctcaacagtatatt
ggaatcatggtaaggaaaccattgcagagattccagttgatgaatgatctctgctacgag
aaggttgtggctgtagctggaaaacatcaagtccttatctttgtccattcgaggaaagaa
acagccaaaacagctcgtgcaataagagatactgcacttgctaaggacacccttggtagg
tttctgaaagaagacagtgcgagccgcgagattctaactactcatacagatttggtcaag
agcaatgatctcaaggatcttctgccatatggctttgctattcatcatgctggattgaac
agggcagatcgccaactggttgaggatctctttgctgatgggcacgtacaagttttggtt
tccacagcaacacttgcttggggtgtgaacctgccagctcacaccgtgataatcaagggg
actcagatctatgatccagaaaagggagcatggactgaactaagtcctttggatgttatg
cagatgttggggcgcgcaggaagacctcagtttgattcgtatggagaagggattatcatt
actggccacaatgaacttcaatactatctttctttgatgaaccaacagcttcccattgaa
agtcaattcatatccaaattggctgaccaactgaatgctgaaatcgttcttggaactgtt
cagaatgctagagaagcttgcaattggataggatacacttacctgtatgttcgcatgtta
cgtaaccctacactctatggtttggaagctgatgttctctccagagatattacattggag
gagagacgagctgatttgatccattccgctgcaaccatcttggacaagagcaatttgatt
aagtacgacagaaaaagtggatatttccaggttacagacttgggtcgcattgcgagttat
tactatataactcatggaacaatatccacatataatgagcatttgaagcctaccatgggg
gatattgaactttgtcgattgttctcgctcagtgaagaatttaagtacgttactgtgcgg
caggatgaaaagatggagctagcaaagcttttggatcgtgttcccattccggtgaaggaa
agcctggaagagcccagtgccaagatcaatgtcttgctgcaagcatatatttcacagctg
aagcttgaggggctttcattgacatcagatatggtctacattactcagagtgcagggcgt
cttctccgagctcttttcgagattgtcttgaaacgaggatgggctcaactagcggaaaag
gctatgaacatgtgtaagatggttaacaagaagatgtggagtgtccaaacacctcttcgc
caattcactggtattgcaaatgatattttgatgaagctggagaagaaggatttggcctgg
gataggtattatgacctctcgtcacaggagctaggggagcttattcgtatgccaaagatg
ggaagaacacttcataagttcatccaccagttccccaaattaaaccttgcagcccatgtg
cagccgattactcgcactgtattgagggtggagctcactatcacaccagatttccagtgg
gaggacaaagttcatggatatgtggagccattttgggtaatagtggaggataatgacggc
gagtttgttcttcatcacgaatattttctgctgaagaagcagtatattgatgaggatcat
actttgaactttacagtaccaatttatgagccccttccacctcaatacttcattcgtgtg
gtgtctgataggtggcttgggtcccagactgttttacctgtttctttcagacacctcatc
ttaccggaaaagtatcctccaccaacagagttattggacttgcaaccacttcctgtgacc
gcattaaggaatccgttatatgaagctttgtatcaagatttcaagcatttcaatcctgtc
cagactcaggtcttcactgttttgtataattcagatgacaatgtcttagttgccgcacca
acagggagtgggaagaccatatgtgcagagtttgctgtattgaggagtcatcagaaacgc
tctgataatgtcatgcgtgttgtgtatattgcacctattgaagctcttgctaaggaacgg
taccgtgactgggagaagaagtttggaaaaggtctcaatctgcgagttgaattattaaca
ggggaaacgaccacagacctaaaactacttgagagaggtcagattatcatcagcactcca
gagaaatgggatgctttatcccgccgctggaaacagagaaagcatgttcaacaggttagt
ctttttattgtagatgaactccacttgattggtggtcagggtggtcccatcttggaggta
atagtctctagaatgagatacatagcaagtcaatctgagaacaagattcgtattgtggcc
ctgtcaacttctcttgcaaatgcaaaggatcttggagaatggataggggctagctctcat
ggccttttcaattttcctcctggtgtgcgcccggtgcctctggaaatacacattcagggg
gtggatttggctaattttgaagccaggatgcaagcaatggcaaaacccacatacacagca
attgtccagcatgccaagaatgcgaaaccagctcttgtgtatgtccctacaaggaaacat
gttcgactaacagctgtggatctgatgacctactcaaatgcagacggtggggagaaaccg
tcatttctgttgcggtctgtagatgatattgagcctttcattgaaagacttggtgatgaa
attttgaaaggcactttgcgaagtggagtgggctacttgcatgaaggtttaagcagtttg
gaccaagaaattgtgtcacagctttttgaagctgggtggattcaagtttgtgtcatgagc
agttcaatgtgctggggagtgcctttgtctgcccatttggtggttgtgatgggaactcag
tattatgatggccgggaaaatgttcacactgattaccctgttactgatctgttgcagatg
atgggtcatgccagtcgccctctgctagataattctgggaaatgtgtcatcctctgccat
gcgcctcgtaaagaatactacaagaagttcttgtatgaagcattccctgttgaaagccat
ttgcaccattatctacatgataatctgaatgcagaagttgttgctggaataattgagaac
aagcaagatgctgtcgattaccttacatggactttcttgtaccggaggctcacacaaaat
cccaactattacaatctccaaggagttacccagaggcatctttctgatcacctctccgag
cttgttgaaaatacactgagtgacttggaggcaagcaagtgtgttgctattgaggatgac
atggacctttctcctttaaatcttggcatgatagcttcatattattacatcagttatacc
accattgagcgtttcagttcttccttgacttccaaaacaaagatgaagggtcttcttgaa
attcttactcacgcttcagagtattcccagcttcctattcgaccaggggaggaagaggtg
gttcggaggctaattaaccaccagaggttttcctttgataatcccaaatgcacagaccct
catgttaaggcaaatgctctgcttcaggcccactttgcaaggcagcctctgggtgggaat
ctagcgttggaccagcgagaggtgatcctttccgcaagtaggttgcttcaggcaatggtt
gatgtgatttctagcaatggctggctaagccttgctgtcttagccatggaagtcagccag
atggtgactcagggtatgtgggatcgtgattcgatgcttctacagcttcctcacttcaca
aaggagttggcaaagagatgccaagaaaatcctggaaaaagtatagagactgtgtttgat
ttggttgagttggatgatgatgaaaggcgcgagctacttcagatgtcagattcacagttg
ctggatattgcacgcttttgcaaccggtttcccaacattgatatgctatacgaggtgctg
gatagggacaacataagggccggggaagaaatcactctgctagtcactcttgaacgtgac
ctcgaagggaggacggaggttggccctgtggatgccctgaggtatcccaaggccaaagaa
gagggctggtggcttgtagtgggcgataccaagacaaactcgttgctcgccatcaagaga
gtttcgctgcagaggagggccaaggtgaagctcgaatttgctgctcccaccgaacccgga
gagaagagttacattctttacttcatgtgtgattcatatttgggatgcgatcaggaatat
gatttcactcttgatatcaaagatgcagccgggcctgacgacgacagcggcggagaatga
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integrated database retrieval system
