Pyrus x bretschneideri (Chinese white pear): 103949142
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Entry
103949142 CDS
T03446
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103949142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pxb03041
]
103949142
Spliceosome [BR:
pxb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103949142
Complex C
U5 SnRNP specific factors
103949142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Dynamin_N
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
103949142
NCBI-ProteinID:
XP_009358518
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREDEDEELPDRQEDGAASDGDDAAAGPNGWLTAAND
VDMDNQVVLAEDKKYYPTAEEVYGEDVETLVMDEDAQPLEQPIIKPVRNVKFEVGVKDSS
TYVSNQFLLGLMSNPSLVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFDSNSEKHMRYTD
TRIDEQERRISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTAALRLADGAVLIV
DAAEGMMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPRDAYFKIRHTLDVINTHI
TAASSTAGNVQTIDPVAGNVCFASATAGWSFTLQSFAKLYLKLHGADNTDVDKFASRLWG
DMYYHPDDRSFRRKPPASGGERSFVQFVLEPLYKIYSQVIGEHKKSVEGTLAEFGVTLSN
AAYKLNVRPLLRLACSSVFGYASGFTDMLVQHIPSPKGAATRKVDHIYTGPKDSSIYKAM
KDCDPDGPLMVNVTKLYPKSDCSVFDAFGRVYSGKIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWLYQARDRIPIAEAPPGTWVLIEGVDASIMKTATICNEYYDEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVV
SIDWSRKDIGNFFQTRYEWDVLAARSIWAFGPDKQGPNILLDDTLSTEVDKSLLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDARIAQEPLHRGSGQIIPTSRRVAYSSFLMATP
RLMEPVYYVEIQTPIDCISAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMMVELAQQAADLHLQMM
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtctgtacgatgagtttgggaactacataggcccggaaattgagtctgat
caagagagtgatagagaggatgaggatgaggagctacccgataggcaagaggatggggct
gcatcggacggcgatgatgcagctgctggtcccaatgggtggctgactgccgccaatgat
gtcgatatggataaccaggttgtccttgctgaggacaaaaagtattatccaaccgctgaa
gaggtctacggtgaagatgttgagacattggttatggatgaagatgcacagcctctggaa
caacccattattaagcctgttaggaatgtcaagtttgaggttggtgtcaaggattcttcc
acctacgtgtcaaatcagttccttttgggactcatgtcgaacccatctctggttcggaac
gttgctcttgttgggcatttgcagcatgggaagacggtgttcatggatatgttggtagag
cagactcaccatatgtccacttttgattcaaatagcgagaagcacatgaggtacactgat
acaaggattgatgagcaagagaggaggatatccattaaagccgttcctatgtccctagta
ctcgaggatagcaggtctaaatcgtatttgtgcaacatcatggatacacctggtcatgtc
aatttctctgatgaaatgactgcagctctcaggcttgctgacggtgctgtcttgattgtg
gatgctgcagaaggaatgatggtaaataccgagagggctatacgccatgcaatccaagag
cgactaccaattgtggttgtaatcaacaaggttgacagattgataacagaactcaaattg
cccccaagagatgcttacttcaagataaggcatactttggacgtcattaatacccacata
actgcggcctcgtcaactgctggcaatgtacaaactattgaccctgttgcaggaaatgtt
tgctttgcaagtgctactgcaggatggtcattcacattgcaatcgtttgcaaagctatat
cttaaactccatggggctgataatacggacgtagataagtttgcttctcgtctctgggga
gatatgtactatcatccggatgacaggagtttcaggagaaaaccccctgccagtggagga
gaaaggtcatttgtccagtttgtgcttgaacccctgtataaaatatatagccaggtaatt
ggagaacataaaaagagtgtggagggaactcttgccgaatttggtgtcacgctcagcaat
gcagcttacaagttgaatgttagacctctgctgaggttggcttgtagctcagtctttgga
tatgcctcaggctttactgatatgctggttcaacatattccttcccctaaaggtgccgcc
actaggaaagtagaccatatatatactggaccaaaagactcttcgatttacaaggccatg
aaagattgtgatcctgatggtcctttgatggtcaatgtgacaaaattgtatcccaagtcc
gactgtagtgtgtttgatgcatttggtagggtttatagtggcaagattcagacagggcag
actgtacgggtattgggagaaggttattcaccagaggatgaggaggacatgacagtcaaa
gaggtgacaaagttatggctttatcaagctcgagacaggataccaatagccgaggctcct
cctggtacttgggttcttattgaaggtgtggatgcttctattatgaaaactgccaccatc
tgtaatgaatattatgacgaggatgtgtacatcttccgtcctcttcagttcaatactctg
ccagttgtgaaaacagcaaccgagccactaaatccaagtgagctgccaaagatggtggag
ggactgagaaagataagcaagagttatcctcttgcaatcactaaagttgaggagtctggg
gagcacacgatattagggacaggagaactctacttggattcaataatgaaggacctaaga
gagctttattcggaagtagaagtcaaggttgcggatcccgttgtttcgttctgtgaaaca
gtggtagagtcttcatcaatgaaatgttttgctgaaacacccaataagaagaataaaata
actatgattgcagagccattggagagaggacttgctgaggacattgagaatggtgttgta
agcattgattggtctcggaaggatataggcaattttttccagactagatatgagtgggat
gttcttgctgcacggtccatatgggcatttggccctgataagcagggacctaacattcta
ttagatgacacactttccactgaagttgacaaaagcttgctaaatgctgtgaaggattcg
attgttcaagggtttcagtggggtgctcgagaaggacccctttgtgatgaaccaatcaga
aatgtaaagttcaaaattgtggatgcaaggattgcccaagagccattacatcgtggatct
ggccagatcattcccacatctcgacgtgtggcctattcatctttcctgatggcaacacca
cggcttatggagccagtatattatgtggagatacaaacacccatagactgtatttctgca
atctacactgttctatctcgcaggcgtggacatgttacggctgatgttcctcaacctggg
acccctgcttatatcgtcaaggcgttcttaccagtgattgaatcttttggctttgaaact
gacttgaggtaccatacccaaggacaggctttctgcctctcagtgttcgatcactgggct
atagttcctggggatccacttgataaaagcatcgttctgcgaccccttgaacctgccccg
attcagcatctggcccgtgaatttatggtcaagacaagacgtagaaagggaatgagcgag
gatgtgagcatcaacaaattcttcgacgaggctatgatggtggagctggctcagcaggca
gctgatcttcatctccaaatgatgtga
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