Pyrus x bretschneideri (Chinese white pear): 103951138
Help
Entry
103951138 CDS
T03446
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
pxb
Pyrus x bretschneideri (Chinese white pear)
Pathway
pxb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pxb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103951138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pxb03021
]
103951138
03019 Messenger RNA biogenesis [BR:
pxb03019
]
103951138
Transcription machinery [BR:
pxb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103951138
RNA polymerase I system
103951138
Messenger RNA biogenesis [BR:
pxb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
103951138
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Spt5_N
DUF4438
Motif
Other DBs
NCBI-GeneID:
103951138
NCBI-ProteinID:
XP_009360719
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MARHRDEYDDEMEEEEEYDPDQAIDEDDEEEEEERGGGRRPSQKRRRSDFIDDVAEEDDD
EEEEEYDEDDEAYGGGGGGGASRKRKNKRPSGSQFLDIEAEVDTDEEEEDEEGDDDFIAD
NAPDLPEEEDGRRMRHRPLMQEDEQEDLEEIERNLQERYGKSSHREYDEDTTDVDQQALL
PSVRDPKLWMVKCAIGREREVAVCLMQKYIDKPELQIRSVIALDHLKNYVYVEADKEAHV
REACKGLRNIFGQKIMLVPIREMTDVLSVESKAIDLSRDTWVRMKSGTYKGDLAQVADVD
NVRQRVTVKLIPRIDLQALANKMDGREVVRTKAFVPPPRLLNIEEARELHILGDRKQDRM
TGDYYQTINGMMFKDGFLYKAVSIKSISTQNIHPTFDELEKFRKPSENGDGDVASLSTLF
SNRKKGHFLKGDAVIVVKGDLKNLKGWVEKVEEETVHIRPEMKELPKTLAINEKELCKYF
EPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDVTKEHIRVFADDVVESSEVTSGITRIG
AYELHDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREVKCKIEKSFPVEVKY
KHKVSVKDVVRVIDGPCEGKQGPVQHIYRGVLFIFDRHHLEHAGFICVKSHNCALVGGSR
ANGDRNGNSNSRYDHLRTPPRVPQSPNRFSRGGPPSNYGGRNRGGRGHDGLVGTTVKIRQ
GAYKGYRGRVVEVKGPNVRVELESQMKVVTVDRNCISDNVAVTTPYRDTSRYGMGSETPM
HPSRTPLHPYMTPMRDAAATPIHDGMRTPMRDRAWNPYAPMSPARDNWEEGNPASWGASP
QYQPGSPPSRAYEAPTPGSGWANTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQPMT
PNSASYLPGTPGGQPMTPGTGGLDMLSPVIAGGDSEGPWFLPDILVSVHSSGEETTGVVR
EVLPDGSCRVAIGSGGNGETIIALPNEMEAVVPKKSDKIKIMGGSLRGATGKLIGVDGTD
GIVKVDDTLDVKILDLAILSKLAQS
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcacagagacgaatatgacgacgagatggaggaagaggaagaatacgacccg
gaccaagctatagacgaggacgacgaggaggaagaggaggaacgaggaggaggacggcgg
cccagtcagaagcggaggagatcggatttcatagacgatgtagcagaggaggacgatgac
gaggaggaagaggagtacgatgaggatgacgaggcttatggtggtggtggtggtggtggt
gcgagtcgtaagaggaagaacaagaggccctctgggtcgcagtttctcgacattgaggcc
gaggtagataccgacgaagaagaagaagacgaggagggggatgatgactttattgctgat
aatgcacctgatctacctgaagaagaggatggtagaaggatgcgtcatcggccgttgatg
caagaagatgagcaagaagatcttgaagagattgagagaaatcttcaagagcggtatggg
aagtcaagtcatagggagtatgatgaagacaccacagatgtggatcagcaagctctttta
ccttctgttagggacccaaagttgtggatggtgaaatgtgcgatcggtcgtgagcgggag
gtagctgtttgcttaatgcaaaagtatatcgataaacctgaactgcagatcagatctgtt
attgctcttgaccaccttaaaaactatgtatacgttgaagcggacaaagaagcccacgtg
agggaggcttgcaaaggtctgcgcaatatatttggccagaaaataatgcttgttccaatt
agagaaatgactgatgttctttcggttgaaagcaaggctattgatctttctagggatacg
tgggtcagaatgaagagtgggacatataaaggagaccttgcccaggttgcggatgtggac
aatgtgcggcagagagttacagttaaattaattccaaggattgatttacaagctcttgca
aataaaatggatggcagagaagttgtgagaacaaaagcatttgttcctcctccacgttta
ttaaatattgaggaagcaagggaactgcatattcttggagatcgtaaacaagatcggatg
actggtgattattatcagacgattaatggcatgatgtttaaagatggtttcctgtataaa
gcagtatcaattaaatcaattagtactcagaacatacatcccacgtttgacgaacttgaa
aaatttcggaagcccagcgagaatggtgatggagatgttgcaagtctgtcaactttattt
tcaaacagaaagaagggacactttctgaagggcgatgcagttattgttgtcaagggagat
ctaaaaaatttgaagggatgggttgagaaagttgaggaggagactgttcatatcagaccc
gaaatgaaagaactcccaaaaacacttgccatcaatgaaaaagagctttgcaaatacttt
gaacctgggaatcatgtgaaagttgtatctggcactcaggaaggtgcaactggtatggtt
gttaaggttgagcagcatgttctcatcatcttgtctgatgtaacgaaagaacatatccgt
gtgtttgctgatgatgttgtggagagctctgaggtgacatctggtattaccagaattggg
gcatatgagcttcatgatctcgtgctactggataataatagcttcggtgtaatcatacgc
gtagaaagtgaagcattccaggttcttaagggagttcctgatagacctgaggtcgccctt
gtcaagttaagagaggtcaaatgcaagattgagaagagttttcctgtggaagttaagtat
aaacacaaggtatctgtgaaggatgttgtgagggtcattgatggcccttgtgaggggaaa
cagggtcctgtgcaacacatatacagaggagtcttgttcatctttgatcgccatcacctg
gagcatgcaggctttatctgtgttaagtctcataattgtgctcttgtgggaggttcacgt
gctaatggcgatagaaatggtaactccaattcacgatatgaccacctcagaactcctcct
cgtgttcctcagtccccgaataggttttctagaggaggacctccatctaactatggagga
aggaatagaggtggacgagggcatgatggcttggttgggactacagtaaagattcgccag
ggggcctataaaggttatcgtggacgtgttgttgaggttaagggaccaaatgtacgggtt
gagttggagtcccaaatgaaggttgttacagttgatcgtaattgtatttctgataatgtg
gctgttaccacaccttatcgtgatacatctcgctacggtatgggaagtgagactcccatg
catccttctcgaactcctctccatccatatatgactcctatgagggatgctgcagcaaca
cctatacatgatggcatgaggactcctatgcgtgaccgagcatggaatccatatgcacct
atgagtccagctagggataactgggaggaaggaaaccctgcttcttggggtgctagccca
cagtatcagccaggaagtcctccttcgcgggcgtatgaagcaccaactcctggttcaggt
tgggcaaacactcctggtggaaattatagtgaagctggtacaccgagggacagtagttcc
gcttatgcaaatgctccgagcccttacttgccatcaactccaggtggccagcctatgaca
ccaaattcggcatcctaccttcctggaacccctggagggcagccaatgacaccaggcact
ggtggtctggatatgttgtctcctgttatagcaggtggggacagtgaaggaccgtggttc
ctcccagacatattggtcagtgtacacagttctggagaggaaactactggggttgtgaga
gaagtgcttccggatggctcctgtagggtagctattgggtcgggtggcaacggggaaact
ataatagcacttcctaatgaaatggaggcggtggtaccgaagaaaagtgataagataaag
atcatgggtgggtcactacgaggagcgaccggtaagctgattggtgttgatggcacagac
ggaattgtgaaggtagatgacactcttgatgttaagattttggacttggctattttgtca
aaactagcccaatcgtaa
DBGET
integrated database retrieval system
