Pseudomonas xantholysinigenes: HU772_011075
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Entry
HU772_011075 CDS
T07643
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pxn
Pseudomonas xantholysinigenes
Pathway
pxn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pxn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU772_011075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pxn03400
]
HU772_011075 (ligD)
Enzymes [BR:
pxn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU772_011075 (ligD)
DNA repair and recombination proteins [BR:
pxn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU772_011075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXI40574
UniProt:
A0A9E6Q0J8
LinkDB
All DBs
Position
complement(2450817..2453285)
Genome browser
AA seq
822 aa
AA seq
DB search
MAKPLQEYQRKRDFNATPEPAGKRARPRLAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLNYADFEGHIPEGHYGAGDVIVWDRGVWEPEGDPHEA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKKEQWMLVKSHDGQARSETDYRIVEALPDSVL
SERTLPPRRPAKASASTRKRKAGRKALPALLQPQLATLVDSPPSGDWRYEVKFDGYRILA
RIDGDDIRLFTRNGHDWSAKMPRQVEALKALGLDAAWLDGEMVVVGDNGAADFQALQNAF
DTEHDERITYYLFDLPWLGDEDLRELQLQARRDTLAKLLEDNASPLLRYSADFKEPVDSL
LDSACRLELEGLIGKRADSPYVGRRSSDWIKLKCKQRQEFVIVGYTDPKGSRNGFGALLL
ALHDHDSGQLRYAGKVGTGFSAATLDSILARLKPLQIVKPPLASPPTGAEARGVHWLKPQ
LLAEVAYAQMTREGIVRHSVFHGLRDDKPATAIDLERAMPAKRAAQTRSKGLGNLRLTHP
ERVVDATTGATKRQVAQYYAQVADRLLPQLKDRPVALVRAPDGLGGELFFQKNAGQLHIP
HVLSYSKAQAGQAAMVLNRADSLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMA
GLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLK
GANQWNIGNLQARLAEVDDPWAEMARTRQSITVRMRKQLGIA
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgatttcaatgccacgcccgagccg
gctggcaaacgcgccaggccacgcttggcccacgcgctgcagtactgcatccagaaacac
gatgccagccacttgcactacgatttccgcctggaactcgacggcaccctcaagagctgg
gcgatccccaagggaccctcgctcgatcccaaggtccggcgcctcgcggtgcacgtggag
gatcacccactgaattacgccgatttcgaaggacacattcccgaaggccattacggcgct
ggtgatgtgatcgtctgggatcggggtgtctgggagcctgagggcgatccgcatgaagcc
tacgccaagggcaagctgcgctttcgcctgcaaggcgagaagctatcggggatctggaat
ctgttccgtacccacctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
ggacaggcgcgcagcgaaaccgactaccgcatcgtcgaggccctgccggacagcgtgctg
agcgagcgcaccctgccaccgcggcgcccggccaaggcaagcgcttccacgcgcaaacgc
aaggccggccgcaaagccctgccggcgctgctccagccacaactggccacgctggtcgac
tcacctcccagcggcgactggcgttacgaagtcaagttcgatggctaccggatcctggcc
cgcatcgacggtgacgacatacgcctgttcacccgcaatggccacgactggagcgcgaag
atgccccgccaggtcgaggcgctcaaggcactggggctcgacgcggcgtggctggacgga
gaaatggtggtagtcggcgacaatggtgcagccgatttccaggccttgcagaacgccttc
gacaccgagcacgacgaacgtatcacctattacctgttcgacctgccctggctgggcgat
gaagacttgcgcgaactgcagctacaggcacgtcgcgacaccctggccaagctgctggaa
gacaatgcttcgccactgctcaggtattcagccgacttcaaggagccagtcgactcgctg
ctcgacagcgcctgccgtctagagctcgaaggactgatcggcaaacgtgccgacagcccc
tacgtcggccgacgcagcagcgactggatcaagctcaagtgcaaacagcgccaggaattc
gtgattgtcggctacaccgaccccaagggcagtcgcaacggcttcggcgccctgctgctg
gccctgcacgaccacgacagcggccagctgcgctacgccggcaaggtcggcaccggcttc
agcgccgccaccctggacagcatcctcgcccgcctgaaaccgctgcagatcgtcaagccg
cccttggccagcccccccacaggggccgaagctcgcggcgtgcactggctcaagccgcaa
ctgctggcggaagtcgcctacgcccagatgacccgcgaaggcatcgtgcgccattcggtg
ttccacggtctgcgcgacgacaaacccgccaccgccatcgacctggagcgagcgatgccc
gccaaacgcgcagcacagacacgatccaagggcctgggcaacctgcgcctgacccacccc
gagcgtgtggtcgacgcgaccaccggggccaccaagcgccaggtcgcacagtactacgcc
caggtcgccgatcggctgctgccacagctcaaggatcggcctgtcgccctggtccgggca
ccggatggcctgggcggcgagctgttcttccagaagaacgccggccagctgcatattccc
cacgtgctcagctacagcaaggcccaggccggccaggcggccatggtgctcaatcgcgcc
gacagcctgctgggcgcggtacagatgaacacactggaattgcacacctggaatgccacc
accaaggacttcgacaagcccgaccgcttcgtgctcgacctggaccctgatcccgcgctg
ccctggaaagccatgctcgaggccacccagttgacccttaccctgctcgatgagctgggc
ctgaaggtgttcctcaagaccagcggcggtaagggcatgcacttggtcgtgccgttgacc
cggcgcgccggttgggacgaagtgaaggacttcagtcatgccttggtcgaacacatggcc
ggcctgttccccgatcgcctcagcgccgtgtccgggccgaagaaccgggtcgggcggatc
ttcatcgactacctgcgcaacggcaagggcgccaccaccgtcgccgcctactcgctgcgc
gcccgcgagggcctgccggtgtcggtgccgatctggcgcgaggaactgactcagctcaag
ggcgccaaccaatggaacatcggcaacctgcaggcgcggcttgccgaggtggacgatccg
tgggccgaaatggccaggacccgccaatcgatcaccgtgcgcatgcgcaagcaactgggg
attgcctga
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