KEGG   Pyrococcus sp. ST04: Py04_1516
Entry
Py04_1516         CDS       T02124                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pys  Pyrococcus sp. ST04
Pathway
pys03030  DNA replication
pys03410  Base excision repair
pys03420  Nucleotide excision repair
pys03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pys00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Py04_1516
   03410 Base excision repair
    Py04_1516
   03420 Nucleotide excision repair
    Py04_1516
   03430 Mismatch repair
    Py04_1516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pys03032]
    Py04_1516
   03400 DNA repair and recombination proteins [BR:pys03400]
    Py04_1516
Enzymes [BR:pys01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Py04_1516
    6.5.1.6  DNA ligase (ATP or NAD+)
     Py04_1516
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Py04_1516
DNA replication proteins [BR:pys03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Py04_1516
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Py04_1516
DNA repair and recombination proteins [BR:pys03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Py04_1516
   NER (nucleotide excision repair)
    Other NER factors
     Py04_1516
   MMR (mismatch excision repair)
    Other MMR factors
     Py04_1516
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Tcp10_C TPR_1 DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: AFK23087
UniProt: I3RFS7
LinkDB
Position
1500070..1501749
AA seq 559 aa
MRYLELAQLYQKLEKTTMKLIKTRLVADFLKKVPDDHLEFIPYLILGDVFPEWDERELGV
GEKLLIKAVAMATGIDANEIENSVKDTGDLGESIALAVKKRKQKSFFSQPLTIKRVYQTL
VKVAETTGEGSQEKKMKYLANLFMDAEPIEAKYIARTVLGTMRTGVAEGLLRDAIALAFH
VKVELVERAYMLTSDFGFVAKVAKLEGNEGLAKVQVQIGKPIKPMLAQQAANIKEALLEM
GGEAEFEIKYDGARVQVHKDGDKIIVYSRRLENVTRAIPEIVEALKQSVKPNKAIVEGEL
VAIGEDGRPLPFQYVLRRFRRKHNIQEMMKKIPLELNLFDVLYVDGESMIDVKFIDRRKK
LEEIIEPNGKIKVAENLITKKVEEAEAFYKKALEMGHEGLMAKRLDATYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFLEVGKVGSGFTDEDLVEFT
KMLKPLIIKEEGKRVWIEPKIVIEVTYQEIQKSPKYKSGFALRFPRYVALRDDKGPEDAD
TIERIAQLYELQERMKGKV
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaggtacctcgagcttgcccagttgtatcagaagctagagaaaacaactatgaaactt
atcaaaaccaggctagttgcagattttctcaaaaaagttcccgatgaccatttagagttt
attccctacctgatccttggagacgtgttcccagagtgggacgaaagagaactcggagtt
ggagaaaagctgttaattaaagccgtagcaatggccactggaatagacgcaaacgaaata
gaaaactccgtaaaagatactggggacttaggagaaagcattgccttagctgtaaagaag
agaaagcaaaagagcttcttctcacagccattaacaatcaagagagtctatcaaacatta
gttaaggttgcagagaccacgggggaggggagtcaagagaaaaagatgaaatatctagca
aacctgtttatggatgctgaacccatagaggcaaaatacatagcaagaactgttcttgga
acaatgagaactggagtagcagaaggattgctcagagatgcaatagctttagcatttcac
gtcaaagttgaactcgtagagagagcatacatgctgacaagtgatttcggattcgtggca
aaagttgcaaagttggaaggaaacgaagggctggctaaagttcaagttcagatagggaaa
ccaataaaacctatgctcgcacagcaggctgcaaacatcaaggaagctctccttgaaatg
ggaggagaagcggagtttgaaataaaatatgacggggcaagagttcaagttcacaaggac
ggagacaaaataatagtttactcaagaaggctagaaaacgtaactagggcgattccagaa
atagttgaagcactaaagcaaagtgttaagccaaacaaggcgatagttgagggagaatta
gtagcaataggagaggacggaagaccactcccgtttcaatatgtactaaggaggtttaga
aggaaacacaacatccaagaaatgatgaagaaaatacccctggaacttaatctatttgat
gttctctatgttgatggagagagtatgatcgacgttaaattcatagacagaaggaaaaag
ctcgaggaaataatagaaccaaatggaaaaataaaggttgcagagaaccttataactaag
aaagtggaagaagctgaagccttctacaagaaggccctagaaatgggccatgaaggattg
atggccaaaagattagacgcaacatacgaaccaggaaacagaggaaagaaatggcttaag
ataaagccaacgatggagaatcttgacctcgtaataataggggcagaatggggagaagga
agaagggcacacctcctggggtctttcattcttggtgcatatgacccagagaccggagag
ttccttgaagttggaaaggttggaagcgggttcacggacgaagacttagtagagttcacc
aaaatgctgaaacctctcataattaaggaagaaggaaaaagagtgtggatcgagccaaag
atcgtcatagaggtaacttatcaggaaatccaaaagagtccgaaatacaagagcggcttc
gcactcagattcccaaggtacgttgcattaagagacgacaaaggaccagaagatgcagat
acaattgaaagaatagcccaattatacgagcttcaggaaagaatgaaaggaaaagtctaa

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