Polynucleobacter yangtzensis: PKF023_18610
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Entry
PKF023_18610 CDS
T08788
Symbol
xth-1
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pyt
Polynucleobacter yangtzensis
Pathway
pyt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pyt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PKF023_18610 (xth-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pyt03400
]
PKF023_18610 (xth-1)
Enzymes [BR:
pyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
PKF023_18610 (xth-1)
DNA repair and recombination proteins [BR:
pyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
PKF023_18610 (xth-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Glyco_hydro_47
Motif
Other DBs
NCBI-ProteinID:
BDT78058
UniProt:
A0A9C7C6U2
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All DBs
Position
1919819..1920601
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AA seq
260 aa
AA seq
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MLRIISANLNGIRSAVKKGFLPWAVKQKADFICMQELKAQRDDLEDAILNPDGLHAYFHH
AEKKGYSGCGIYTPHKPDEVLYGYGNEEFDAEGRYVEARFKGLSVISVYMPSGSSSPERQ
EAKYRYLDSFLPHLIALKKSGREIVLCGDVNIAHQEIDLKNWKGNLKNSGFLPEERAWLT
NLFSKVGYVDVYRQLEPEATETCYTWWSNRGQAYAKNVGWRIDYHISTPGIAQTAKKTTV
YKDEKFSDHAPLTVDYDWKI
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgttacgcatcatttccgcgaacctcaacggtatccgttccgcagtcaaaaaaggcttt
ctgccatgggccgtaaagcaaaaggccgacttcatttgcatgcaggagctcaaagcccag
cgcgatgatttagaagacgccattctcaatcccgatggcttgcatgcctacttccaccat
gctgagaagaagggctatagcggttgcggaatttatacccctcataagcctgatgaggtc
ttatacgggtacggtaatgaagagttcgatgctgaggggcgttatgtagaggcgcgcttt
aaagggctttctgttatttcggtctacatgccctcgggctccagctcacctgagcgacaa
gaggctaaataccgctatcttgatagcttcctcccacatctcatagccctcaaaaaatca
ggtcgagagattgtgctttgtggagacgtcaatattgcccatcaagaaatcgacctgaag
aactggaaaggtaatctcaaaaattctgggtttttacctgaagagcgtgcatggttaacc
aatctatttagcaaagtgggttacgtcgatgtctatcgtcagctcgagcccgaagcgact
gagacttgttacacctggtggagtaatcgcggacaggcttatgcgaaaaacgtggggtgg
cgcattgactatcacattagcacaccaggtattgcgcaaaccgctaagaaaaccaccgta
tataaagatgaaaaattttcagatcacgcaccactcactgtggattacgactggaaaatt
taa
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