Pseudomonas zarinae: HU749_015185
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Entry
HU749_015185 CDS
T07889
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pza
Pseudomonas zarinae
Pathway
pza03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU749_015185 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pza03400
]
HU749_015185 (ligD)
Enzymes [BR:
pza01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU749_015185 (ligD)
DNA repair and recombination proteins [BR:
pza03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU749_015185 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Myosin_N
Motif
Other DBs
NCBI-ProteinID:
QXH92223
LinkDB
All DBs
Position
3493628..3496210
Genome browser
AA seq
860 aa
AA seq
DB search
MSRKTLDDYNRMRDFAATPEPAAKRSRKSARTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPQDDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDEAARPESEYDVVQAEPD
SVLSDRTLVPKRRGKAAAAAVKQAEKAVQPKSPKRPSKTTLSGAVTGPLPETLKPELATL
VESAPDGDWLYEIKFDGYRVMARIENGDVKLLTRNGHDWTHKLPRQAEALAALGLESAWL
DGEMVVANDQGVPDFQALQNAFEAGSSGKIAYYLFDMPYLNGMDLRKVPVQERRAALAAV
LEPNESPLLRFSDAFEETPEALLNSACQMQMEGLIGKRIGSAYVSRRSNDWIKLKCKNRQ
EFVVVGFSDPKGARSAFGALLLGLHDVDSGQLRYAGKVGTGFNESTLKSIYQRLLPLETK
EPAVANPPTGYEAKGVHWLEPTLLAEVAFAEMTKEGSVRHAVFHGLRDDKPAKDITQELA
KPVKKTTAAKKTRAKSEPDVVSPMDGKVRITHPERVIDASSGTTKLQLAEYYASVAEFIL
PELADRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKELTGQPVMIINNAEALIGAV
QMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGLKAFLKT
SGGKGIHVVVPLTRKLGWDEVKGFSHAIVNHMAKLLPDRFSAVSGPKNRVGRIFIDYLRN
GLGATTICAYAARTREGLPVSVPIFREEVAELKGANLWNVRNVHERLAEVGHEPWVGLKT
TRQSITAEMRRRIGMKKTAK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaagaccctggatgattacaaccgcatgcgcgacttcgccgccaccccggag
ccggcggcgaagcgctcgcgcaaatcggcaagaaccgcccatgccttgcagttctgtatt
caaaaacacgacgcctcgcggctgcattacgattttcggctggaactggacggtgcgctc
aagagctgggcggtgcccaaaggcccctccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgctggattacgcgacgttcgaaggcaacatccccgagggccat
tacggtgccggtgacgttatcgtctgggaccggggcgtctggattccccaggatgatccc
catgaggcctatgaaaaaggccggctcaagttcgaactgcaaggcgaaaagctcagcggc
ctgtggaacctggtgcgcacccacatgcccggcaagcaggagcagtggttcctgatcaag
catcaggacgaggccgcccggcccgagagcgaatacgacgtggtccaggccgagccggac
agcgttctcagcgatcgcaccctcgtgcccaagcgccgcggcaaggccgctgcagcagcg
gtgaaacaagcggagaaagccgtccagccgaaatcgccgaaacgcccctcgaaaaccacc
ctaagcggtgcggtcacaggaccattgccggaaaccctcaagccggaactggcaacgctg
gtggaaagcgcgcccgacggcgattggctctatgagatcaagttcgacggttaccgggtc
atggcgcgcattgaaaacggcgatgtaaagctgctcacccgcaacggccatgattggacc
cataaattgccaagacaggccgaagccttggctgcgctgggcttggaatcggcttggctc
gacggcgaaatggtggttgccaacgaccagggcgtgccggacttccaggccttgcagaat
gcttttgaggccggcagcagcggcaagatcgcttactacttgttcgacatgccttacctt
aacggcatggatttgcgcaaagtgccggtacaagagcgccgggcggcattggccgcagtg
ctggagcccaacgaaagtcccttgctgcggttttccgatgctttcgaagaaactcccgaa
gcgctgctcaacagcgcctgccagatgcagatggaagggttgatcggcaagcgcatcggc
agtgcctatgtgtccaggcgcagcaacgactggatcaagctcaagtgcaagaatcgccag
gagttcgtggtggtgggcttcagcgatcccaagggcgctcgcagcgcctttggtgccttg
ctgctggggctgcatgatgtcgacagcggtcagttacgctacgccggcaaggtcggcacc
gggttcaacgaaagcacccttaaaagcatctaccagcgactactgcccctggagacgaaa
gagcccgccgtggcgaatccgcccaccggctacgaagccaagggcgtgcattggctcgaa
ccgacgctgttggccgaagtggcctttgccgagatgaccaaggaaggttcggtgcgccat
gcggtcttccatggcttgcgcgacgacaagccggccaaggacatcacccaggagttggcc
aagcctgtgaaaaaaaccaccgcagcgaagaaaacccgggccaaatctgaaccagacgtg
gtatcgcccatggacggcaaggtccgcatcacccacccggagcgagtcattgacgccagc
agcggcaccaccaagctgcaactggccgagtactacgccagcgtggccgaattcatcctg
ccggaactggcggatcgcccggtggccttggtcagggcgccggatggcatcgccggggag
ctgttcttccagaagaacgccgagcgcctggcgattcccggcatcaccagtctggataag
gaactgaccgggcagccggtgatgatcatcaacaacgctgaggcgctgatcggcgcggtg
cagatgagcacggtggaactgcacacctggaatgccacctctgttgatctggacaagcct
gaccgtttcgtcctcgaccttgacccggacccggccttgccctggaaaagcatggtcgag
gcgacgcagctcacgttatcggtgctcgatgagctggggctcaaggcgtttctcaagacc
agcggtggcaagggcatccatgtggtggtgccgctgacgcgcaaactgggctgggacgag
gtcaaggggttcagccatgcgattgtcaatcacatggccaagctgctgccggaccgtttt
tcggcggtgtccgggccgaagaaccgggtagggcggatcttcatcgattatctgcgtaat
gggttgggcgccaccaccatctgtgcctacgcggcccggacgcgggaagggttgccggtt
tcggtgccgatttttcgcgaggaagtggctgagctcaagggcgcgaatctttggaatgtg
cgcaatgttcatgagcggctggcggaagtggggcatgagccttgggttgggctcaagaca
actcgacagagtattactgctgagatgcgacgacgtatcggcatgaagaagaccgcgaag
taa
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