Quercus lobata (valley oak): 115970054
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Entry
115970054 CDS
T07350
Name
(RefSeq) DNA mismatch repair protein MSH4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
qlo
Quercus lobata (valley oak)
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
qlo03036
]
115970054
Chromosome and associated proteins [BR:
qlo03036
]
Eukaryotic type
Meiosis-specific proteins
Others
115970054
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_27
Motif
Other DBs
NCBI-GeneID:
115970054
NCBI-ProteinID:
XP_030945579
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Position
12:complement(11629082..11642577)
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AA seq
792 aa
AA seq
DB search
MEDEGGERSSIVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSSSYQNTKTLLHFYDPM
VIIVTPNKLAPDGMVGVSELVDRFYAKVKKVVMGRGCFDDTKGAVLIKNLAAKEPSALGL
DTYYKQYYLCLAATAATIKWTEAEKGVIVTNHSLLVTFNGSFDHMNIDATSVQNLEIIEP
LHSTLWGTSNKKRSLFHMLKTTKTIGGTRLLRANLLQPLKDIETINARLDCLDELMSNEQ
LFFGLSQVLRKFPKETDRVLCHFCFKPKKVTNGVLGIDYARRSQMLISSIILLKTALDAL
PLLSKALKDAKSFLLENVYKSICENEKYASIRKRIGEVIDEDVLHARVPFVARTQQCFAV
KAGIDGLLDIARRSFCDTSEAIHNLATKYREDFKLPNLKLPFNSRQGFYFSIPQKDIQGK
LPSKFIQVLKHGNNIHCSTLELASLNVRNKSAAAECYIRTEVCLEALLDAIREDVSVLTL
LAEVLCLLDMIVNSFAHTISTKPVDRYTRPEFTDNGPMAIDAGRHPILESIHNDFIPNNI
FLSEASNMVIVMGPNMSGKSTYLQQVCLTVILAQIGCYVPARFSTFRVVDRIFTRMGTVD
NLESNSSTFMTEMRETAFVIQNVSRRSLIVMDELGRATSSSDGFAIAWSCCEYLLSLKAY
TIFATHMENLSELATIYPNVKILHFHVDIRNNRLDFKFELKDGPRYVPHYGLLLAEVAGL
PSSVIETARSITSRITEKEVKRMEVNYLQYHPIQTAYRVAQRLICLKYSSQDEDSIRQAL
QDLKEQYIDGRL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgagggaggagagagatcgagcatcgtgattggtctcatcgagaacagagct
aaagaggttggagttgctgctttcgacttaaggtcagcttcactgcatctttctcaatat
attgagaccagcagttcatatcagaatacaaaaactttgctgcatttctacgatcccatg
gtgatcattgttaccccgaacaagctggcaccggatggtatggttggagtttcagagttg
gtggatagattttatgctaaagtaaaaaaggttgtaatgggccgtggttgctttgatgat
actaagggtgctgtgctgattaaaaatctagcagccaaggagccttctgcacttggtttg
gatacttattacaagcagtattatctatgcttggctgccactgcagctactattaaatgg
acagaagcagaaaaaggggtcattgttacaaaccactcgttgttggttacgttcaatgga
tcatttgaccacatgaatattgatgctaccagtgtacaaaatttagaaattattgagcca
cttcattcaaccctttggggcacaagcaacaaaaaaagaagtctgttccatatgcttaag
acaacaaaaactattggagggactagacttcttcgtgccaatcttttgcagcctttgaaa
gatattgaaaccatcaatgctcgccttgattgcctggatgagctgatgagcaatgaacag
ctgttttttggcctctctcaggttctgcgtaaatttccaaaagagacagatagagtactg
tgtcatttctgctttaagccaaagaaagtcacaaatggcgtcttgggtattgattacgct
aggagaagccaaatgttaatctcaagcattattctccttaaaacagcattggatgcactg
cctttactctcaaaggcacttaaggatgcaaaaagttttcttcttgaaaacgtatacaaa
tctatatgtgaaaatgagaaatatgcgtccattagaaaaaggatcggagaggtgattgat
gaagatgttcttcatgcacgggttccttttgttgcccgcacacagcagtgttttgctgtc
aaggcaggcattgatggacttttagatatagcaaggaggtcattttgtgatactagtgaa
gcaatacataatcttgcgaccaagtatcgcgaagatttcaaattgcccaatttgaaactc
ccatttaacagtaggcaaggtttttactttagcataccacagaaggatattcaaggaaag
cttcctagcaagttcattcaggtcttgaaacatgggaacaacatacattgctcaactctg
gaacttgcttctctgaatgttagaaataagtctgcagctgcagagtgttatatacgaaca
gaagtttgcctggaagcacttttagatgccatacgggaggatgtttctgtgctcactctc
cttgctgaggtcttatgtcttttagacatgattgtcaattcatttgctcatacaatatcg
actaagcctgttgatcgatatactagacctgaatttacagataatggtccaatggcaatt
gatgctggaagacaccctatcttggaaagcatacacaatgatttcattcccaacaacatc
tttctctcagaagcatcaaatatggtgattgtcatgggcccaaacatgagtggaaagagc
acttaccttcaacaagtttgtctcacagttattcttgctcagattggttgctatgttcct
gctcgcttctcaacttttagggtagttgatcgtatattcacaaggatgggtacagtggat
aatcttgaatcaaactctagtacgttcatgacagagatgagagagacagcttttgtaatt
cagaatgtctccagaaggagtctgattgttatggatgaacttgggagggctacttcttcc
tctgatggatttgcgattgcatggagctgctgcgagtatctgttatcattgaaagcgtac
accatatttgctactcatatggagaacctatcagaattagcaaccatctatccaaatgtg
aagattcttcactttcatgttgacataagaaacaaccgtttagatttcaagtttgaactc
aaggatggtccaagatatgtaccacattatggtctattattagcagaagtggcaggttta
ccaagctcagtgattgaaacagccagaagcataacatccaggatcacagaaaaggaagtg
aagaggatggaagtaaactacctgcagtatcatccaatccagacggcctaccgtgttgct
caacggcttatatgtttgaagtactccagccaagatgaggattcaattcggcaagcattg
caggatctaaaagagcagtatattgacggaaggctctag
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