Quercus lobata (valley oak): 115970181
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Entry
115970181 CDS
T07350
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
115970181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qlo03400
]
115970181
DNA repair and recombination proteins [BR:
qlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
115970181
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
115970181
NCBI-ProteinID:
XP_030945703
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All DBs
Position
12:8399545..8405497
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AA seq
1193 aa
AA seq
DB search
MDYSLPIASRTRQGRAQFYEDCIVEKKEKMKKGRKESNGVDLAGSSRPHRVDGVKGYERL
GSESESFAVSDSSVEEIDVDDCSEEGDELMDFVGNESLKLKNKGNSNKGFEGMANVDEIM
LDNSEDEVVILGEGRDLVGAESEEDVICIDVDEEDDMSEEDVTESGELNSDWRRGNDEPV
SLRKGKGETNSLNIDERKSSEDGDGCGDAVFDDSCDAVDLVGSDSSLESSSCEEDKNDED
DQDYEVEKLETCASLEQLSSDSGGEEEEKGGDAEEFEVVKRGSHGRGRPKGVDVGLKRRK
YGLEILVDVENDEDNCVARRTRSCFVSKLGKKKMKLGTLSHPLCVDEEEVESSSGHDDSD
DVADDVGSGRVKAGSNDESEDYSSDDETGHGGKIKSVSASEKFKTNRGNIDACERNLHGK
DKGKLKIPIKGNRIRLSKNCNVLTILADSILEKGDRLEELVSFRDESNPPVAEMSLPLKF
TFGIQESNPPEKSEEEKEMDKLWADMELALRSSEIGYVEDEDSLLPEDEVDRATLCHQGY
HQLILDEEVGLRCEFCPHVQLEIKYIVPDFSINPFRKSDRRDSGAMNNSIIDELRSQDWC
GDSLSNCDPQLRAEGTVWDIIPGIKNSLYPHQCEGFEFIWKNIAGGIHIQKLKHQTTCAG
GSGCIISHAPGTGKTRLTIVFLQTYMKLHPTCRPVIVAPRSMLLTWEEEFRKWDFDIPFH
NLNKNELSGKEKLRQDGHMNISVIRMVKLYSWKKDRSILGISYTLFEKLAGEVNKKGKVR
TEQDSHFRKILLEVPGIVVLDEGHVARNPDSRILQVLSNIKTDKRIILSGTPFQNNFYEL
YNTLCLARPVFEDKEGKWLSLTSSITKVTDDRLKYEKLRKVRDMIQPFVHVHKGFILQEK
LPGLRDSLVILQPSQLQKSLFEELRDHFVRSSFKFDHYESLISLHPSLLLQCGDDSFPSD
KHKLEKSNLEAGVKAKFLIELIRLSEAVNEKVLVFSQFLEPLAFIKDQLKYHFNWNEGKE
MLYMDGKHSMEQRQSSINVFNDPTSEARVLLASIKASREGINLVGASRVVLLDVVWNPSV
ERQAICRAYRLGQKKIVYIYHLIASGAREEAKYYRQTEKDLLSELVFCSSGRGCDQQKIS
RTVSDDKILEEMVQHDKLKYMFEKIAYQQKESKLIETYSWLEKEPVTSSPSSP
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggattatagtttgccaatagctagcaggaccagacaggggcgagcccagttttatgaa
gactgtattgtggagaagaaggagaagatgaagaaggggaggaaggagagtaatggggtt
gacttggctggttctagcagaccccatagagttgacggggttaaagggtatgagagatta
gggtctgagagtgagtcttttgctgtgtctgatagtagcgtggaggagattgatgtggat
gattgtagtgaagaaggagatgaattgatggattttgtggggaatgagagtttgaagttg
aagaataagggaaattcaaataagggttttgagggaatggccaatgtggatgaaattatg
ctggataatagtgaggatgaggtggttattttgggtgaaggaagagatttggttggggca
gagagtgaggaggacgttatttgtatagatgttgatgaggaggatgatatgagtgaggaa
gatgtgactgagagtggtgaactgaattctgattggaggaggggtaatgatgaacctgtt
tcattgagaaaaggaaagggtgagactaatagcttgaacatagatgagaggaagagtagt
gaggatggggatggttgtggtgatgctgtgtttgatgattcatgtgatgctgttgattta
gtagggtctgactcatcgttagaatcatcctcttgtgaagaggacaaaaatgatgaggat
gatcaggattatgaagtggaaaagttggaaacttgtgctagtttggagcaattgagttcg
gatagtgggggtgaagaggaggaaaaagggggagatgctgaggaatttgaggttgtgaag
agagggagtcatgggagggggaggccaaaaggagttgatgttgggttgaagaggaggaag
tatggattggaaattttggttgatgtagagaatgacgaagataattgtgtggctcgaaga
acccgttcttgttttgtttcaaaattgggaaaaaagaaaatgaagctcggaactttaagt
cacccactttgtgttgatgaggaggaagtggagtcttcatccgggcatgatgatagtgat
gatgttgctgatgatgttggcagtggtcgtgtgaaggctgggtctaatgatgagagtgaa
gattattctagtgatgatgagactggtcatggtggtaagataaaatctgtgtctgctagt
gagaaatttaaaactaacagaggcaacatagatgcttgtgagaggaatttacatgggaag
gataaagggaagttgaagataccaatcaagggaaatcgcatccgtttgtcaaaaaattgt
aatgttttgactattcttgcggattccattttggagaagggagatcgtttggaagaattg
gtttcttttagagatgaaagtaatccaccagttgctgagatgtctctcccattgaagttc
acttttggaattcaggagtcaaatccaccagagaaatcagaagaagagaaagaaatggat
aaactttgggctgatatggagttagctcttagatcgagtgaaattggttatgttgaagat
gaagattcccttcttccggaggatgaagtcgatagagctaccctttgccatcaagggtat
catcagcttattcttgatgaagaagttggactgagatgtgaattttgcccacacgtgcaa
ctggaaatcaagtatattgtaccagattttagtataaatccttttagaaaatcagacagg
agagactcaggtgcaatgaacaactccatcattgatgagcttaggtctcaagactggtgt
ggtgattccctctctaactgtgatccccaacttcgagctgaaggcactgtgtgggacatc
attcctggtataaaaaatagtttgtatccacatcaatgtgaaggttttgaatttatttgg
aagaatatagctggaggaattcatattcagaagttgaaacatcaaacgacttgtgctggt
gggagtggctgcattatatcacatgctcctgggacaggaaaaacccgtttaaccattgtt
tttcttcagacatacatgaaattacatcccacatgcaggcctgtcattgttgctcctcgt
agcatgctccttacatgggaagaggagttccggaaatgggattttgacatcccatttcac
aatctgaacaagaatgagttgtcaggcaaggaaaagctgaggcaagatggacacatgaac
ataagtgtaatccgtatggtaaagttgtattcctggaaaaaggatagaagcatcctgggg
atcagttacacactgtttgaaaagcttgctggagaagttaataaaaagggtaaagtaagg
actgaacaagatagtcatttcaggaagatccttcttgaggttcctggtattgtagtcctt
gatgaagggcacgttgctcgcaatcctgatagtcgtatcctgcaggttttgtcaaatata
aaaacggataagcgcatcatcctttcgggaactccatttcaaaataatttttatgagctt
tataatacgctatgcttggcaaggccagtgtttgaagacaaagaaggtaaatggttatct
cttacgagttccattactaaagtcactgatgatagactgaaatatgagaaactgaggaag
gttagagatatgattcagccatttgttcatgtacacaaaggtttcatactacaagaaaaa
cttccagggctgagggactctttggttatattacagccatcccagctgcagaagagcctc
tttgaggaactccgtgatcattttgtaaggtccagcttcaaatttgatcattatgaatct
ttgatttctctccacccttcactgttgctacagtgtggagatgacagttttccttctgac
aagcataaattagaaaaatcgaatcttgaggctggagtcaaagcaaaatttttaattgaa
ctcatccggctttctgaggctgtgaatgaaaaagttttggtttttagtcaattccttgaa
ccgttagcctttataaaggaccagcttaagtatcattttaattggaatgaaggaaaagag
atgttgtatatggatggaaagcatagtatggagcagcgccaatcctcaattaatgttttc
aatgatccaactagtgaagcaagggtattattagcatcaataaaggcaagccgtgaaggg
ataaatctggttggggcttcaagggttgttttactggatgtggtatggaatccttcagtt
gaaaggcaagctatatgtcgtgcatataggcttgggcagaaaaagatagtgtacatatac
catctcattgcgtctggtgcaagggaagaagcgaagtattatcgacaaactgagaaggac
ttgttgtctgagttagtattctgttcttctggcaggggttgtgatcagcagaaaatctcc
cggacagtgtcagatgataaaattttggaagagatggttcaacatgataaacttaagtat
atgtttgaaaagatagcataccaacagaaagagtctaaactgattgagacttatagctgg
ttggagaaagaaccagtaacatcctcaccatctagtccttga
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