Quercus lobata (valley oak): 115976069
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Entry
115976069 CDS
T07350
Name
(RefSeq) WD repeat-containing protein VIP3
KO
K12602
WD repeat-containing protein 61
Organism
qlo
Quercus lobata (valley oak)
Pathway
qlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
qlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115976069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
qlo03019
]
115976069
Messenger RNA biogenesis [BR:
qlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
115976069
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
eIF2A
Cytochrom_D1
Ge1_WD40
PD40
WD40_like
Motif
Other DBs
NCBI-GeneID:
115976069
NCBI-ProteinID:
XP_030953022
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All DBs
Position
2:complement(61717246..61719928)
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AA seq
321 aa
AA seq
DB search
MKLAGLKSVENSHDESVWAATWVPATETRPALLMTGSLDETVKLWGSDELVLERTNTGHS
LGVASVAAHPSGLIGASASLDSFVRVFDVDTNATIATLESPPSEVWQLRFNPEGSTLAVA
GGGSASITLWDTATWGLVATLPIPRPEGPKPSDKSGSKKFVLSVAWSPDGRRLACGSMDG
TISVFDVARAKFLHHLEGHFMPVRSLVYSPTEPRLLFSASDDAHVHMYDSEKKSLVGAMS
GHASWVLSLDVSPDGQALATGSSDRTVRLWDLNMRAAVQTMSNHTDQVWGVAFRPPGGTG
VRSGRLASVSDDKSISLYDYS
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgctggactgaaatccgtcgagaactcccacgacgagtcggtatgggcggcc
acgtgggtcccagccaccgagacccgacccgctttgttgatgaccgggtcactggacgag
acagttaagctatggggctccgacgagctggtcctggagcgaaccaacaccgggcacagc
ctgggagtggccagcgtggcagctcacccctcgggactcatcggcgcgtcggcctcactc
gacagcttcgtgcgtgtcttcgatgtcgataccaacgccaccatcgccactctcgaatct
cctccctctgaagtctggcaattgcgcttcaatcctgagggttctactctggcagtcgct
ggtgggggtagtgcatcaatcaccctttgggacactgccacatggggtctggttgccact
ctacctattcctcgtccagaaggtcccaagccctctgataaaagcggcagcaagaagttt
gtcctgtcggttgcctggagtcctgatgggagacgacttgcttgtggctcaatggatggc
accatctctgtttttgatgtagctcgtgccaaatttttacaccacttggaaggccacttc
atgcctgtgaggtctcttgtgtactcccctactgaacctcgcctactcttttcagcctca
gatgatgcacatgtgcacatgtatgattctgaaaagaaatccctggttggagccatgtca
ggtcatgctagttgggtattgagtttggatgtaagcccagacgggcaagctcttgcaaca
ggttcaagtgatagaactgtgaggctttgggatcttaacatgagggcagctgtgcagaca
atgagcaatcatacagaccaggtctggggagtggcatttcgaccaccaggagggactggt
gtgcggtctggtcggcttgctagtgtatcagatgacaagagcatatcactgtacgattat
tcctga
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