KEGG   Qipengyuania spongiae: L1F33_02020
Entry
L1F33_02020       CDS       T08950                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
qsp  Qipengyuania spongiae
Pathway
qsp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:qsp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    L1F33_02020 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:qsp03400]
    L1F33_02020 (ligD)
Enzymes [BR:qsp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L1F33_02020 (ligD)
DNA repair and recombination proteins [BR:qsp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     L1F33_02020 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: UVI39763
LinkDB
Position
complement(405812..408322)
AA seq 836 aa
MTRKDPLATYNAKRDFGKTPEPSGKAAASESGNLFIVQKHDATRLHWDLRLEADGVLKSW
AVTKGPSPDPDVKRLAVRTEDHPMSYAEFEGTIPKGEYGGGTVMLWDRGTWSPIEGKSAK
DIEKGHLHFCLEGERMRGEWLLIRLKKKPGEKRENWLLRKLQDDHAQEGDALVEKELTSV
LTGRSMAEIAADRKGEYPLAGKKDDAFAAQMAKASSRNAKKARSGSRDAAIPGFRKPQLA
TLVDSVPAGNRWMHEIKFDGYRALVAAKGGEVRVYTRSGKDWTDKFAPLVEAVAALDLPS
CLIDGEIVAVDAKGNPDFSTLQQVLKRGHGAQGKGDRLQLHAFDCLELGGEDLTDLPNIE
RKERLEALLATAEDPVFLADHVIGAGETLFRTMCDAGQEGIISKTVDGPYSGRRSKAWVK
VKCTRRQEFVVIGWKKSSAKGRPFASLLLAQHEGGELVYKGNVGTGFTTDDLDDLAAKMR
RLERKTPPAEVDKPSSRGVTWVTPSLVAEIAFAEFTADGNVRHGSFLGLRGDKTAAEVTP
EKPADAPAADDAVAISNRDRVVFPDSGQTKGELADYYAAIAPLMLPFAARRPVSLVRCPQ
GRARKCFFQKHDSGSFGDAVHHVPIAEKDGGTEDYLFVEDTRGIMQCVQMGTIEFHGWAS
RSSDVEAPDRMIFDLDPDEGLDFGDVKSAARDIRDRLADLGLTSFAMLSGGKGVHVVVPL
TTGHSWETHKDFAKRFAEALSMAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAVLPYSA
RARSGAPVAVPIAWNELKGMENAHPYSIDEAKTLLDRAASKSLHGWGFAEQRLPDI
NT seq 2511 nt   +upstreamnt  +downstreamnt
atgacccggaaggacccgctcgccacctacaacgccaagcgcgatttcggaaagacgccg
gaaccttcaggcaaggcggcggcgagcgaaagcggcaacctcttcatcgtccagaagcac
gacgccacgcggctgcactgggatctgcggctggaggcggacggcgtgctcaagagctgg
gcggtcaccaaggggccatcgcccgacccggacgtgaagcggctggccgtccggaccgag
gatcacccgatgtcctacgccgagttcgaggggaccattcccaagggcgaatatggcggc
ggcacggtgatgctgtgggaccgggggacatggtcgccgatcgagggcaagagcgcgaag
gatatcgagaagggccatctccatttctgcctcgaaggcgagcggatgcgcggcgaatgg
ctgttgataaggctgaagaaaaagccgggagagaagcgggaaaactggctgctgcgcaaa
ttgcaggacgatcacgcgcaggagggcgacgcgctggtcgagaaggaactgaccagcgtt
cttaccgggcgttcaatggccgagatcgcggccgacaggaaaggcgagtacccgctcgcg
ggcaagaaggacgatgccttcgccgcgcagatggccaaggcttcctcccgcaacgcgaaa
aaggcgcgatccggctcgcgcgatgccgcgatccccggattccgcaagccgcaactcgcc
acgctggtcgacagtgtgccggccggcaatcgctggatgcacgagatcaagttcgacggc
tatcgcgcgctggtcgcggcgaagggcggggaggttcgcgtctatacccgcagcggcaag
gactggaccgacaagttcgctccgctggtcgaggcggtggccgcgctcgacctgccgagc
tgcctgatcgacggcgagatcgtcgcggtcgatgcgaagggcaatcccgatttctcgacc
ctgcaacaggtcctgaagcgcgggcacggcgcgcaagggaagggcgaccgcttgcagctc
cacgccttcgactgcctcgaactgggcggcgaggacctgaccgacctgcccaatatcgag
cgcaaggaacgattggaggcgctgctcgccacggcggaggatccggtcttcctggcggat
cacgtgatcggtgcgggcgagacgctgtttcggaccatgtgcgatgccgggcaggaaggg
atcatctccaagaccgtcgacggcccgtattcgggccgccgcagcaaggcctgggtcaag
gtgaaatgcacccggcggcaggaattcgtggtgatcgggtggaagaaatcctccgccaag
ggccgccctttcgcctcgctcctgctggcccagcacgaagggggcgaactggtctacaag
ggcaatgtcgggaccggtttcaccaccgacgatctcgacgatctcgccgcgaagatgcgc
cggctggagcgcaagacgccgcccgccgaagtcgacaaaccctcgtcgcgcggcgtgacc
tgggtgacgcccagccttgtcgccgagatcgcctttgccgaattcaccgccgacgggaat
gtccgccatggcagctttctcggcctgcgcggcgacaagacagccgccgaggtcacgccc
gaaaagcccgccgacgcgccagctgcggacgatgcggtcgcaatttccaaccgcgaccgg
gtggtcttccccgacagcggccagacgaagggagagctggccgattactacgccgccatc
gccccgctgatgctgcctttcgccgcgcgtcgcccggtcagcctcgttcgctgtccgcaa
gggcgggcgcgcaaatgcttcttccagaagcacgacagcggcagcttcggcgacgcggtc
caccacgttcccatcgccgagaaggatggcgggacggaggactacctctttgtcgaggat
acgcgcgggatcatgcaatgcgtccagatgggcacgatcgagttccacggctgggcgtcg
cgttcgtccgatgtcgaggcgcccgaccggatgatcttcgacctcgatcccgacgagggc
ctcgatttcggcgacgtgaagagcgccgcgcgcgacattcgcgaccggctggcggatctg
gggctgacgagcttcgccatgctttcaggcggcaagggcgtccacgtcgtcgtcccgctc
acgacgggccattcgtgggaaacgcacaaggatttcgccaaacgcttcgccgaggcgctg
agcatggccgagcccgaccgcttcaccgcgacgatgagcaaggccaagcgcaagggaaag
atcttcatcgactggctgcgcaaccagcgcggcagcaccgcggtcctgccctattcagcg
cgggcccgcagcggcgctccggtcgcggtgccgatcgcgtggaacgagctgaaggggatg
gagaacgcccacccctactcgatcgacgaggcgaagacactgctcgaccgggcggcgtcg
aaatcgctccacggctggggtttcgccgaacagcgcctgcccgacatctga

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