Qipengyuania spongiae: L1F33_02020
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Entry
L1F33_02020 CDS
T08950
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
qsp
Qipengyuania spongiae
Pathway
qsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
qsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L1F33_02020 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qsp03400
]
L1F33_02020 (ligD)
Enzymes [BR:
qsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L1F33_02020 (ligD)
DNA repair and recombination proteins [BR:
qsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L1F33_02020 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UVI39763
LinkDB
All DBs
Position
complement(405812..408322)
Genome browser
AA seq
836 aa
AA seq
DB search
MTRKDPLATYNAKRDFGKTPEPSGKAAASESGNLFIVQKHDATRLHWDLRLEADGVLKSW
AVTKGPSPDPDVKRLAVRTEDHPMSYAEFEGTIPKGEYGGGTVMLWDRGTWSPIEGKSAK
DIEKGHLHFCLEGERMRGEWLLIRLKKKPGEKRENWLLRKLQDDHAQEGDALVEKELTSV
LTGRSMAEIAADRKGEYPLAGKKDDAFAAQMAKASSRNAKKARSGSRDAAIPGFRKPQLA
TLVDSVPAGNRWMHEIKFDGYRALVAAKGGEVRVYTRSGKDWTDKFAPLVEAVAALDLPS
CLIDGEIVAVDAKGNPDFSTLQQVLKRGHGAQGKGDRLQLHAFDCLELGGEDLTDLPNIE
RKERLEALLATAEDPVFLADHVIGAGETLFRTMCDAGQEGIISKTVDGPYSGRRSKAWVK
VKCTRRQEFVVIGWKKSSAKGRPFASLLLAQHEGGELVYKGNVGTGFTTDDLDDLAAKMR
RLERKTPPAEVDKPSSRGVTWVTPSLVAEIAFAEFTADGNVRHGSFLGLRGDKTAAEVTP
EKPADAPAADDAVAISNRDRVVFPDSGQTKGELADYYAAIAPLMLPFAARRPVSLVRCPQ
GRARKCFFQKHDSGSFGDAVHHVPIAEKDGGTEDYLFVEDTRGIMQCVQMGTIEFHGWAS
RSSDVEAPDRMIFDLDPDEGLDFGDVKSAARDIRDRLADLGLTSFAMLSGGKGVHVVVPL
TTGHSWETHKDFAKRFAEALSMAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAVLPYSA
RARSGAPVAVPIAWNELKGMENAHPYSIDEAKTLLDRAASKSLHGWGFAEQRLPDI
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgacccggaaggacccgctcgccacctacaacgccaagcgcgatttcggaaagacgccg
gaaccttcaggcaaggcggcggcgagcgaaagcggcaacctcttcatcgtccagaagcac
gacgccacgcggctgcactgggatctgcggctggaggcggacggcgtgctcaagagctgg
gcggtcaccaaggggccatcgcccgacccggacgtgaagcggctggccgtccggaccgag
gatcacccgatgtcctacgccgagttcgaggggaccattcccaagggcgaatatggcggc
ggcacggtgatgctgtgggaccgggggacatggtcgccgatcgagggcaagagcgcgaag
gatatcgagaagggccatctccatttctgcctcgaaggcgagcggatgcgcggcgaatgg
ctgttgataaggctgaagaaaaagccgggagagaagcgggaaaactggctgctgcgcaaa
ttgcaggacgatcacgcgcaggagggcgacgcgctggtcgagaaggaactgaccagcgtt
cttaccgggcgttcaatggccgagatcgcggccgacaggaaaggcgagtacccgctcgcg
ggcaagaaggacgatgccttcgccgcgcagatggccaaggcttcctcccgcaacgcgaaa
aaggcgcgatccggctcgcgcgatgccgcgatccccggattccgcaagccgcaactcgcc
acgctggtcgacagtgtgccggccggcaatcgctggatgcacgagatcaagttcgacggc
tatcgcgcgctggtcgcggcgaagggcggggaggttcgcgtctatacccgcagcggcaag
gactggaccgacaagttcgctccgctggtcgaggcggtggccgcgctcgacctgccgagc
tgcctgatcgacggcgagatcgtcgcggtcgatgcgaagggcaatcccgatttctcgacc
ctgcaacaggtcctgaagcgcgggcacggcgcgcaagggaagggcgaccgcttgcagctc
cacgccttcgactgcctcgaactgggcggcgaggacctgaccgacctgcccaatatcgag
cgcaaggaacgattggaggcgctgctcgccacggcggaggatccggtcttcctggcggat
cacgtgatcggtgcgggcgagacgctgtttcggaccatgtgcgatgccgggcaggaaggg
atcatctccaagaccgtcgacggcccgtattcgggccgccgcagcaaggcctgggtcaag
gtgaaatgcacccggcggcaggaattcgtggtgatcgggtggaagaaatcctccgccaag
ggccgccctttcgcctcgctcctgctggcccagcacgaagggggcgaactggtctacaag
ggcaatgtcgggaccggtttcaccaccgacgatctcgacgatctcgccgcgaagatgcgc
cggctggagcgcaagacgccgcccgccgaagtcgacaaaccctcgtcgcgcggcgtgacc
tgggtgacgcccagccttgtcgccgagatcgcctttgccgaattcaccgccgacgggaat
gtccgccatggcagctttctcggcctgcgcggcgacaagacagccgccgaggtcacgccc
gaaaagcccgccgacgcgccagctgcggacgatgcggtcgcaatttccaaccgcgaccgg
gtggtcttccccgacagcggccagacgaagggagagctggccgattactacgccgccatc
gccccgctgatgctgcctttcgccgcgcgtcgcccggtcagcctcgttcgctgtccgcaa
gggcgggcgcgcaaatgcttcttccagaagcacgacagcggcagcttcggcgacgcggtc
caccacgttcccatcgccgagaaggatggcgggacggaggactacctctttgtcgaggat
acgcgcgggatcatgcaatgcgtccagatgggcacgatcgagttccacggctgggcgtcg
cgttcgtccgatgtcgaggcgcccgaccggatgatcttcgacctcgatcccgacgagggc
ctcgatttcggcgacgtgaagagcgccgcgcgcgacattcgcgaccggctggcggatctg
gggctgacgagcttcgccatgctttcaggcggcaagggcgtccacgtcgtcgtcccgctc
acgacgggccattcgtgggaaacgcacaaggatttcgccaaacgcttcgccgaggcgctg
agcatggccgagcccgaccgcttcaccgcgacgatgagcaaggccaagcgcaagggaaag
atcttcatcgactggctgcgcaaccagcgcggcagcaccgcggtcctgccctattcagcg
cgggcccgcagcggcgctccggtcgcggtgccgatcgcgtggaacgagctgaaggggatg
gagaacgcccacccctactcgatcgacgaggcgaagacactgctcgaccgggcggcgtcg
aaatcgctccacggctggggtttcgccgaacagcgcctgcccgacatctga
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