Quercus suber (cork oak): 112000670
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Entry
112000670 CDS
T05868
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
qsu
Quercus suber (cork oak)
Pathway
qsu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
qsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112000670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
qsu03400
]
112000670
DNA repair and recombination proteins [BR:
qsu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
112000670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
112000670
NCBI-ProteinID:
XP_023888594
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MDYSLPIASRTRQGRAQFYGDCIVEKKEKMKKGRKESNGVDLAGSSRPHRVDGVKGYERL
GSESESFAVSDSSVEEIDVDDCSEEGGELMDFVGNESLKLKNKGNSNKGFEGMANVDEIM
LDDGEDEVVILGEGRDLVGEEREEDVICIDVDEEDDMSEKDVTENGELNSDWRRGNDEPV
SLRKGKGETSSLNIDERKSSEDGDGCGDAVFDDSCDAVDLGASDSSLESSSCEEDKDYED
DQDYEVEKLETCASLEQLSSDSGGEEEEKGEDAEEFEVEKRGSHGRGRPKGVDVGLKRRK
YGLEILVDVENDEDNCVARRTRSCFVSKLGKKKMKLGTLSHPLCVDEEEVESSSGHDDSN
DGADDVGSGGVKAGSNDESEDYSSDDETGHGGKIKSVSASEKFKTNRGNIDACERNLHGK
DKGKLKIPIKGNRIRLSKNCNVLTILADSILEKGDRLEELVSFRDESNPPVAEISLPLKF
TFGIQESNPPEKSEEEKEMDKLWADMELALRSSEIAEGTVWDIIPEDEVDRATLCHQGYH
QLILDEEVGLRCEFCPHVQLEIKYIVPDFSRNPFRKSDRRDSGAMNNSIIDELSSQDWCS
DSLSNCDPQLRAEGTVWDIIPGIKNSLYPHQCEGFEFIWKNIAGGIHLQKLKHQTTCAGG
SGCIISHAPGTGKTRLTIVFLQTYMKLHPTCRPVIVAPRSMLLTWEEEFRKWDFDIPFHN
LNKNELSGKEKLRQDGHMNISVIRMVKLYSWKKDRSILGISYTLFEKLAGEVNKKGKVRT
EQDNHFRKILLEVPGIVVLDEGHVARNPDSRILQVLSNIKTDKRIILSGTPFQNNFYELY
NTLCLARPVFEDKEGKWLSLTSSITKVTDDRLKYEKLKKVRDMIQPFVHVHKGFILQEKL
PGLRDSLVILQPSQLQKSLFEELRDHFVRSNFKFDHYESLISLHPSLLLQCVDDSFPSDK
HKLEKSNLEAGVKAKFLIELIRLSEAVNEKVLVFSQFLEPLAFIKDQLKYHFNWNEGKEM
LYMDGKHSMEQRQSSINVFNDPTSEARVLLASIKASREGINLVGASRVVLLDVVWNPSVE
RQAICRAYRLGQKKVVYIYHLIASGAREEAKYYRQTEKDLLSELVFCSSGRGCDQQKIAR
TVSDDKILEEMVQHDKLKYMFEKIAYQQKESKLIETYSWLEKEPVTTSPSRP
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggattatagtttgccaatagctagcaggaccagacaggggcgagcccagttttatgga
gactgtattgtggagaagaaggagaagatgaagaaggggaggaaggagagtaatggggtt
gacttggctggttctagcagaccccatagagttgatggggttaaagggtatgagagatta
gggtctgagagtgagtcttttgctgtgtctgatagtagtgtggaggagattgatgtggat
gattgtagtgaagaaggaggcgaattgatggattttgtggggaatgagagtttgaagttg
aagaataagggaaattcaaataagggttttgagggaatggccaatgtggatgaaataatg
ctggatgatggtgaggatgaggtggttattttgggtgaaggaagagatttagtcggggaa
gagagagaggaggatgttatttgtatagatgttgatgaggaggatgatatgagtgagaaa
gatgtgactgaaaatggtgaactgaattctgattggaggaggggtaatgatgaacctgtt
tcattgagaaaaggaaagggtgagactagtagcttgaacatagatgagaggaagagtagt
gaggatggggatggttgtggtgatgctgtgtttgatgattcatgtgatgctgttgattta
ggagcgtctgactcatcgttagaatcatcctcttgtgaagaggacaaagattatgaggat
gatcaggattatgaagtggaaaagttggaaacttgtgctagtttggagcaattgagttcg
gatagtgggggtgaagaggaggaaaaaggggaagatgctgaggaatttgaggttgagaag
agagggagtcatgggagggggaggccaaaaggagttgatgttgggttgaagaggaggaag
tatggattggaaattttggttgatgtagagaatgacgaagataattgtgtggctcgaaga
acccgttcttgttttgtatcaaaattgggaaaaaagaaaatgaagctcggaactttaagt
cacccactttgtgttgatgaggaggaagtggagtcttcatccgggcatgatgatagcaat
gatggtgctgatgatgttggcagtggtggtgtgaaggctgggtctaatgatgagagtgaa
gattattctagtgatgatgagactggtcatggtggtaagataaaatctgtgtctgctagt
gagaaatttaaaactaacagaggcaacatagatgcttgtgagaggaatttacatgggaag
gataaagggaagttgaagataccaatcaagggaaatcgcatccgtttgtcaaaaaattgt
aatgttttgacaattcttgcggattccattttagagaagggagatcgtttggaagaattg
gtttcttttagagatgaaagtaatccaccagttgctgagatatctctcccattgaagttc
acttttggaattcaggagtcgaatccaccagagaaatcagaagaagagaaagaaatggat
aaactttgggctgatatggagttagctcttagatcgagtgaaattgctgaaggcactgtg
tgggacatcattcctgaggatgaagtcgatagagctaccctttgccatcaagggtatcat
cagcttattcttgatgaagaagttggacttagatgtgaattttgcccacacgtgcaactg
gaaatcaagtatattgtaccagattttagtagaaatccttttagaaaatcagacaggaga
gactcaggtgcaatgaacaactccatcattgatgagcttagttctcaagactggtgtagt
gattccctctctaactgtgatccccaacttcgagctgaaggcactgtgtgggacatcatt
cctggtataaaaaatagtttgtatccacatcaatgtgaaggttttgaatttatttggaag
aatatagctggaggaattcatcttcagaagttgaaacatcaaacaacttgtgctggtggg
agtggctgcattatatcacatgctcctgggacaggaaaaacccgtttaaccattgttttt
cttcagacatacatgaaattacatcccacatgcaggcctgtcattgttgctcctcgtagc
atgctccttacatgggaagaggagttccggaaatgggattttgacatcccatttcacaat
ctgaacaagaatgagttgtcaggcaaggaaaagctgaggcaagatggacacatgaacata
agtgtaatccgtatggtaaagttgtattcctggaaaaaggatagaagcatcctggggatc
agttacacactgtttgaaaagcttgctggagaagttaataaaaagggtaaagtaaggact
gaacaagataatcatttcaggaagatccttcttgaggttcctggtattgtagtccttgat
gaagggcatgttgctcgcaatcctgatagtcggatcctgcaggttttgtcaaatataaaa
acggataagcgcatcatcctttcgggaactccttttcaaaataatttttatgagctttat
aatacgctatgcttggcaaggccagtgtttgaagacaaagaaggtaaatggttatctctt
acgagttccattactaaagtcactgatgatagactgaaatatgagaaactgaagaaggtt
agagatatgattcagccatttgttcatgtacacaaaggtttcatactacaagaaaaactt
ccagggctgagggactctttggttatattacagccatcccagctgcagaagagcctcttt
gaggaactccgtgatcattttgtaaggtccaacttcaaatttgatcattatgaatctttg
atttctctccacccttcactgttgcttcagtgtgtagatgacagttttccttctgacaag
cataaattagaaaaatcgaatcttgaggctggagtcaaagcaaaatttttaattgaactc
atccggctttccgaggctgtgaatgaaaaagttttggtttttagtcaattccttgaaccg
ttagcctttataaaggaccagcttaagtatcattttaattggaatgaaggaaaagagatg
ttgtatatggatggaaagcatagcatggagcagcgccaatcctcaattaatgttttcaat
gatccaactagtgaagcaagggtattattagcatcaataaaggcaagccgtgaagggata
aatctggttggggcttcaagggttgttttactggatgtggtatggaatccgtcagttgaa
aggcaagctatatgtcgtgcatataggcttgggcagaaaaaagtagtgtacatataccat
ctcattgcgtctggtgcaagggaagaagcaaagtattatcgacaaactgagaaggacttg
ttgtctgagttagtattctgttcttctggcaggggttgtgatcagcagaaaattgcccgg
acagtctcagatgataaaattttggaagagatggttcaacatgataaactaaagtatatg
tttgaaaagatagcataccaacagaaagagtctaaactgattgagacttatagctggttg
gagaaagaaccagtaacaacctcaccatctcgtccttga
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