Rhodoferax antarcticus: RA876_18090
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Entry
RA876_18090 CDS
T04655
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rac
Rhodoferax antarcticus
Pathway
rac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RA876_18090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rac03400
]
RA876_18090
Enzymes [BR:
rac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RA876_18090
DNA repair and recombination proteins [BR:
rac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RA876_18090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
APW48557
LinkDB
All DBs
Position
complement(3725955..3726740)
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AA seq
261 aa
AA seq
DB search
MFKLTSLNLNGIRSATSKGLQAWLGQIEPDCICVQEIKAQTPDLADRFEHLAGLRGYFHL
ADKKGYSGVGVYSRLEPSDVVAGFDSAEFDAEGRYLELRFDTPAVKRSIISCYFPSGSSG
EERQLAKYRFLDLMYPHLQQLKSQREFIVCSDVNIAHQAIDLKNWRSNQKNSGFLPEERA
WMTKLLGDGGMVDVYRQLHPNTTDEAYTWWSNRGQAYAKNVGWRLDYHLATPAWAAKAQS
VAIYKGEKFSDHAPVSVEYAL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaaattaaccagcttgaacctcaatggtattcgttctgccaccagcaaaggtctg
caggcctggcttgggcaaattgagccagattgtatttgtgtacaggagatcaaagcgcag
acccccgacctggccgaccgctttgagcacctggcgggtttgcgagggtattttcacctc
gctgacaaaaagggctattcgggagtgggtgtttacagccgccttgagcccagtgatgtc
gttgctggctttgatagcgctgagtttgatgccgagggccgctacctggagctgcgtttt
gacacgcccgcggtcaagcgctccatcatcagttgctactttccaagcggctcctcgggc
gaagaacggcagttggccaaatacaggtttctagacctgatgtacccgcacctgcagcag
ctcaaaagccagcgtgagttcatcgtatgcagcgatgtcaacatcgcccaccaggctatt
gacctgaaaaactggcggagcaaccagaaaaactcgggcttcctgccagaagaacgcgcc
tggatgaccaaactgctcggcgatggcggcatggtggatgtgtatcggcagttgcacccc
aacaccacggatgaggcctacacctggtggagcaaccgcggccaggcctacgccaaaaac
gtcggctggcggctggactaccacctggctacgcccgcctgggcggccaaggcgcagtcg
gtggccatctacaagggcgaaaaattttctgaccacgcgccggttagtgtggaatacgct
ctttaa
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