Raineyella fluvialis: Rai3103_14715
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Entry
Rai3103_14715 CDS
T06259
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rain
Raineyella fluvialis
Brite
KEGG Orthology (KO) [BR:
rain00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rai3103_14715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rain03400
]
Rai3103_14715
Enzymes [BR:
rain01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rai3103_14715
DNA repair and recombination proteins [BR:
rain03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rai3103_14715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGF24679
UniProt:
A0A5Q2FD00
LinkDB
All DBs
Position
complement(3206000..3208177)
Genome browser
AA seq
725 aa
AA seq
DB search
MSETTVLSVPGPHGVRKVTLTNPGKVLWPATGFPSGAGLTKRELADYLLTVAEPFLRLNG
DRPMTLQRFPEGIDGEEFFSKRPPQGTPDFFRTVTCTYPSRRRHDQLVFDEPAALAWAAQ
MSTITFHPWPVRTADLNNPDELRIDLDPQPGRNFRDAVEAATALREVMAEVGLTAYAKSS
GNRGVHVYARIRPDHEFQVVRHGVIGIARELERRLPDLVTTSWWKEERGERIFVDFNQAN
RDRTIAAAYSPRPLPTATVSTPLTWPELVDAAPTDFTVRTVPDLLADRPCPWASMDEHVG
DLGPALALWEADLERGLGELNFPPDYPKMPGEPPRVPPSKRRADRADADYLAPKAERDAE
WGTPITPPYGPMLAKPVKDLPKGEMIFEPKWDGFRSIIWRSGDRVEIGSRNERPMTRYFP
EVVEAVLANFPDHSCLDGEIIMVDPATGDRLNFDLLQQRIHPAASRIRKLAKETPASFVA
FDLLALGPVDYTVRPFAERRAALEEALRDAAPPIHLTAATRDRDLARQWFTTFEGAGLDG
VMAKPVDLLYQEDKRVMFKIKHERTADCVVAGYRLYKDRQDAVGSLLLGLYDDEGSLHHV
GVIGAFPLARREELFAELQPLVTTFEGHPWAWQQPEENLPDNRDAETPRSPMAAMGSRWN
ARKDLSFTPLRPERVVEVRYDHMEGPRFRHTAQWVRWREDRTPESCTYAQLEEPVSYDLA
DVLGS
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacgaccgtcctgtcggtccccggtccccacggtgtccgcaaggtgacactg
acgaaccctggcaaggtgctctggcccgccaccgggttccccagtggtgccgggctgacc
aagcgggagttggccgactacctgctgaccgtggccgagcccttcctccggctcaacggc
gaccggccgatgacccttcagcggtttccggaagggatcgatggcgaggagttcttctcc
aagaggccaccgcagggcacccccgacttcttccgtacggtcacctgcacctacccgtca
cgacgtcgtcacgaccagttggtgttcgacgagccggccgcgctcgcctgggccgcgcag
atgagcacgatcaccttccacccctggccggtgcggacggctgacctgaacaaccccgac
gaactgcgcatcgacctcgacccccagccggggcggaacttccgtgatgccgtcgaggcg
gcgaccgcgttgcgggaggtgatggccgaggtcggcctcacggcgtacgccaagagttcg
ggcaaccgcggcgtgcacgtctatgcccgcatccgcccagaccacgagttccaggtggtc
cggcacggcgtcatcggcatcgcccgggagttggagcgtcggctgcccgacctggtcacc
acctcctggtggaaggaagagcgtggcgagcgcatcttcgtcgacttcaaccaggccaac
cgcgatcgtacgatcgccgctgcctacagcccgcggccgttgccgacggcaaccgtctcg
accccgctgacctggccggaactggtggacgccgcgccgacagacttcacggtgcggacg
gtcccggacctgctggcggaccgaccctgcccgtgggcgtccatggacgagcacgtcggt
gatctcgggccggctctggcgctctgggaggccgacctggaacgcgggctgggcgagctc
aacttcccgcccgactacccgaagatgccgggtgagccgccacgcgtcccgcccagcaag
cgccgtgccgaccgggcggacgccgactacctcgccccgaaggcggagcgtgacgccgag
tggggaacgccgatcacgccgccgtacggtccgatgctggcgaagcccgtgaaggacctg
ccgaagggcgagatgatcttcgaacccaagtgggacggcttccggtcgatcatctggcgc
tccggcgaccgggtggagatcggcagccgcaacgaacggccgatgacgcgctacttcccc
gaggtggtcgaggccgtgctggcgaacttccccgaccactcctgcctggacggcgagatc
atcatggtcgatcccgccacaggtgaccggctcaacttcgacctcctgcagcagcggatc
cacccggccgcctcccggatccgcaagctcgccaaggagacgcccgccagcttcgtcgcc
ttcgatctgctggcgctggggcccgtcgactacacggtgagaccgttcgccgagcgtcgg
gccgccctggaggaggcgttgcgggacgcggccccgccgatccacctcaccgccgcgacg
cgggaccgggacctggcccgccagtggttcaccaccttcgagggggccggtctcgacggt
gtgatggccaagccggtcgacctgctctaccaggaggacaagcgggtcatgttcaagatc
aagcacgaacggacggccgactgcgtcgtcgccggctaccggctctacaaggatcgccag
gacgcggtggggtcgctgctcctcggcctctacgacgacgaagggtccctccaccacgtc
ggcgtcatcggcgccttcccgctcgcacgacgcgaggagctcttcgcggaactccaaccg
ctggtgaccaccttcgagggccatccctgggcctggcaacaaccggaggagaatctgccg
gacaatcgcgacgcggagactccccgctcgcccatggcggccatggggtcacgctggaac
gcgcgcaaggatctgtccttcactccgctgcgacccgaacgggtggtcgaggtgcgctac
gaccacatggagggcccgcgcttccgccacaccgcccagtgggtgcgctggcgcgaggat
cgtacgccggagtcgtgcacgtacgcccagctggaggagccggtgagctacgacctcgct
gacgtcctgggcagttga
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