Riemerella anatipestifer RA-GD: RIA_0609
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Entry
RIA_0609 CDS
T02007
Name
(GenBank) D-alanine-D-alanine ligase related ATP-grasp enzyme
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rar
Riemerella anatipestifer RA-GD
Pathway
rar00470
D-Amino acid metabolism
rar00550
Peptidoglycan biosynthesis
rar01100
Metabolic pathways
rar01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rar00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RIA_0609
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RIA_0609
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
RIA_0609
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rar01011
]
RIA_0609
Enzymes [BR:
rar01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
RIA_0609
Peptidoglycan biosynthesis and degradation proteins [BR:
rar01011
]
Precursor biosynthesis
Amino acid ligase
RIA_0609
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp_4
CPSase_L_D2
ATP-grasp
GARS_A
RimK
Motif
Other DBs
NCBI-ProteinID:
ADZ11772
LinkDB
All DBs
Position
complement(582491..583474)
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AA seq
327 aa
AA seq
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MSKKNIAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPI
QKGDFSVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKK
DTLAVLAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEF
EAALEKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAKYQGA
SQEIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYIIMDGVPYMLEMNTNPGFSPAS
ILPQQARIYGISITDLCGNEVEKALAK
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaaaaaatatagccgtagtcatgggcggatactctgatgagtacaaagtttcc
ctaaaaagtggacaactaatttacgactctttagaccgtgatttatacaatgtttataaa
gtggtagttcttaaagaaggttggttttatttagatgaaaatgaagctaagctaccaata
caaaagggagatttctctgtaaatctacctagtggagaagtactgcgttttgatgtttgc
tttaatatcattcatgggacaccaggtgaaaacggcgtgttacaagcatattgggacgct
attggtcaaaaatatacagggtgcgatttttaccaaagtgcacttacctttaataaaaag
gatactttggctgtattagcaaagtatggtattccgtctgctaaaagtttctacataaaa
aaaggggaggcttatgataaagataaaattatcaacgagttaaaactgcctctatttgta
aagcctaaccaaagtggttcttctttaggaatttctaaggtaaaagaggtttcggagttt
gaagcggctttagaaaaagcatttttggaagacgatgaggttttagtagaaagtttctta
gacggtatggaggtatctgtgggtgtgctagattacaaaggtgagactattgttttaggc
attacagaaattatcccagaaacagaattttttgattatgaagcaaagtatcaaggagcg
tctcaagagattatccctgcaaggctagatgaggctactagattaagagtagaggaagtt
gcaaaaagagcttataactatttaggaatgaaagggttttctagaagtgaatatattatt
atggatggtgtgccttatatgctagaaatgaatactaaccctggtttttcacctgcgagt
atccttcctcaacaagcgagaatttacggtatctccattacagatttgtgtggaaacgag
gtagaaaaagctctagcaaaataa
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