Rhodococcus aetherivorans: AAT18_06535
Help
Entry
AAT18_06535 CDS
T03876
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rav
Rhodococcus aetherivorans
Brite
KEGG Orthology (KO) [BR:
rav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AAT18_06535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rav03400
]
AAT18_06535
Enzymes [BR:
rav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AAT18_06535
DNA repair and recombination proteins [BR:
rav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AAT18_06535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKE88952
LinkDB
All DBs
Position
1403527..1405788
Genome browser
AA seq
753 aa
AA seq
DB search
MTTRTFEGRRLNLTNLDKVLYPSTGTTKADVVDYYVAVAPVLLPHVAGRPGTRKRWPEGV
GGESFFEKNLASHAPKWLTRKTVHHKQRSVTYPVFDSVASLAWLGQQAALELHVPQWRFS
GSVPGPATRIVFDLDPGEGVTLAQCAEVARLVRDMVGGLGWPAYPVTSGSKGIHLYVPLD
RELAPGGASTVAKQVAINLETLHPDLVTATMAKAVRGGRVFLDWSQNNQAKTTIAPYSLR
GREQPWVAAPRTWDELDDPGLHQLRFDEVLARLETGPDPLAALDPPLPESDALTEYRHKR
DPSRTPEPVPATVGSGPGNSFVIQEHHARRLHYDLRLERDGVLASWAVPKNLPDDPGRNN
LAVRTEDHPLEYLTFHGVIPKGEYGAGGMTIWDTGTYDTEKWRDDEVIVRLHGARVQGRY
ALIRTAGNQWLAHRMKDQSAPSGPPTSFPRDLEPMLATPGEVTGLDADEWAFEGKWDGYR
AVAEIENGQLRLHSRSGRDITGDYPALADLTRILDGHEVVLDGEVVACDTLGVTSFRQLR
TGGTPQYFVFDVLFLDGVTLYRKPYSDRRRVLDALAAAADGLVVPELLHGNGSEALEEST
RRGWEGVVAKRRNSVYMPGRRSPDWVKSKNWLTQDVVIGGWRLGKGARAGTFGSLLVGVQ
GEAGLEYVGRVGTGFDEPQLAELSAAMAGLRRRTTPFAGDVPREDARDAVWVSPKLVGEV
RFREWTDAGKLWHPSWRGLRDDIDPQDVARGSG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccgcacgttcgaaggccgtcgtctgaacctgacgaacctcgacaaggtgctg
tacccgagcacgggcacgacgaaggccgacgtggtcgactactacgtcgccgtcgccccg
gtgctgctgccgcacgtcgcgggccggcccggcacccgcaaacgctggcccgagggtgtc
ggcggcgagtcgttcttcgagaagaacctcgcctcccacgcgccgaagtggctcacccgc
aagactgttcaccacaagcagcggtcggtgacgtatccggtcttcgactccgtggcgtcg
ctggcctggctggggcagcaggcggcactcgagctgcacgtgccgcagtggcggttctcg
gggtccgtcccgggtcccgcgacgcggatcgtgttcgacctcgacccgggggagggggtc
acgctggcgcagtgcgccgaggttgcccgcctggtgcgcgacatggtcggcgggctgggc
tggccggcctacccggtcaccagcggcagcaaggggatacacctgtatgtgccgctcgac
cgcgagctcgcgccgggcggggcgtcgaccgtggcgaagcaggtggcgatcaacctcgag
acgctgcatcccgacctggtcaccgccaccatggccaaggccgtgcgcggtggccgggtg
ttcctcgactggagccagaacaaccaggccaagacgaccatcgcgccgtattccctgcgc
ggccgggagcagccgtgggtcgccgcgccccgcacctgggacgaactcgacgaccccggg
ttgcaccaattgcggttcgacgaggtgctcgcgcgcctcgagaccggacccgacccgctc
gccgcgctcgacccgccgctgcccgagtccgacgccctgaccgagtaccggcacaagcgc
gacccgtcccgcacccccgaacccgtccccgccaccgtgggatccggaccgggcaattcc
ttcgtcatccaggagcaccacgcccgccgcctgcactacgacctgaggctcgagcgcgac
ggggtgctcgcgtcgtgggcggtgccgaagaatctgccggacgatcccggccgcaacaac
ctcgcggtgcgcaccgaggaccatccgctcgagtacctcaccttccacggcgtgatcccc
aagggggagtacggcgccggcggcatgacgatctgggacaccggcacctacgacaccgag
aaatggcgcgacgacgaggtgatcgtgcgcctgcacggcgcgcgggtgcagggccggtac
gcgctgatccgcacggccggcaaccagtggctcgcgcaccgcatgaaggaccagagcgcg
ccgtcgggcccgccgacgagcttcccgcgcgacctcgagcccatgctcgcgacaccgggt
gaggtgaccggtctcgacgccgacgaatgggcgttcgagggcaagtgggacggctaccgc
gccgtcgccgagatcgagaacgggcagctgcggctgcattcgcgttccggccgcgacatc
accggcgactaccccgctctcgccgatctcacccgcatcctcgacgggcacgaggtggtc
ctcgacggcgaggtggtcgcgtgcgacaccctcggtgtcacaagcttccggcagctgcgg
accgggggcaccccgcagtacttcgtgttcgacgtcctcttcctcgacggggtgaccctg
taccgcaagccgtattccgaccggcggcgcgtgctcgacgcgctcgccgccgcggccgac
gggctggttgttccggaactgttgcacggcaacggatccgaagcgctggaggagagcacc
cggcggggctgggaaggggtggtggccaagcggcggaactcggtgtacatgccgggccgg
cgcagccccgactgggtgaagtcgaagaactggctcacccaggacgtcgtcatcgggggc
tggcgcctcggcaagggggcccgcgccggcaccttcggctcgctgctggtcggcgtgcag
ggcgaggccgggctggagtacgtcggccgcgtcggcaccggcttcgacgaaccccagctc
gccgaactgtcggccgccatggcgggtctgcggcgccgcaccacgcccttcgccggcgac
gtcccgcgcgaggacgcgcgggacgcggtgtgggtgagcccgaagctggtgggggaggtg
cggttccgggagtggaccgacgccggcaagctctggcatccgagctggcgcgggttgcgc
gacgacatcgacccgcaggacgtggcccgcggcagcggatga
DBGET
integrated database retrieval system
