Rhodothermaceae bacterium RA: AWN76_013510
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Entry
AWN76_013510 CDS
T04780
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rbar
Rhodothermaceae bacterium RA
Pathway
rbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWN76_013510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbar03019
]
AWN76_013510
03009 Ribosome biogenesis [BR:
rbar03009
]
AWN76_013510
Enzymes [BR:
rbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWN76_013510
Messenger RNA biogenesis [BR:
rbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWN76_013510
Ribosome biogenesis [BR:
rbar03009
]
Prokaryotic type
rRNA helicases
AWN76_013510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SWI2_SNF2
UTP25
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ARA94069
UniProt:
A0A1V0DGA8
LinkDB
All DBs
Position
complement(3338390..3339988)
Genome browser
AA seq
532 aa
AA seq
DB search
MADASPSSGSPYTQVIDLTTRGQQERKREQGAVGFAEPDPPLPDATLDTVPPSIRKAAAS
AGWPGLTPVQQKTIPYILDRRDLIVQSRTGSGKTGAFLLPLFELIDPARKVPQVLILTPT
RELARQIHEEFERMRGSGEDASPLMAALIYGGVRYGPQLQALKDGAQVVIGTPGRILDHL
ERGNLRLETLEMLILDEADEMLSMGFYPAMRQLKRYLPERRTSYMFSATMPPKVQSLGRE
FLRDPGFLGLSAGQESVDTIEHLTYTVDPMTRDRALVRLIEMENPDSAIIFANTKRDVEY
LTQFLRNYGHDADEISGDLSQQQREKVMDQIRDGELRFLVATDVAARGIDISDLSHVFMY
DVPQDPEYYLHRAGRTGRIGKSGRVIVLVTPVDKNTMLRIARRYGFEVDQRELPSDEDVR
ARISERLTVQLEERLRSRSNLEKERMQRFVPLAEELAREEPELLAMLLDELYHRSLHAPA
RPLSAEEEAERKQHRQRPKSERGRGGRGGGRGGSRGGRGGGRRGGGRGRKGH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcatccccctcttccggtagtccctacacccaggtcatcgacctcaccacg
cgcgggcagcaggagcgcaaacgcgagcaaggcgccgtcggcttcgccgagccggacccg
cccctgcccgacgcgacgctggacaccgtgccgccgtccatccggaaggcggcggcctcg
gccggatggcccggcctgacgccggtgcaacagaaaacgatcccgtacatcctcgaccgg
cgcgacctgatcgtgcagtcgcgcaccggctcgggcaagaccggcgccttcctgctgccg
ctcttcgagctgatcgacccggcgcgaaaggtcccgcaggtgctcatcctgacgcccacg
cgcgagctggcccgccagatccacgaggagttcgagcggatgcggggcagcggcgaggac
gcctcgcccctgatggcggccctgatctacggcggcgtgcgctacggcccgcaactccag
gcgctgaaagacggcgcccaggtcgtcatcggcacgccggggcgcatcctggaccacctc
gagcgcggcaacctccgcctcgaaacgctggagatgctcatcctcgacgaggccgacgag
atgctctcgatgggcttctacccggccatgcgccagctcaaacgctacctgcccgaacgg
cgcacctcctacatgttcagcgccacgatgccgcccaaggtgcagagcctcggccgcgag
ttcctgcgcgatccgggcttcctgggtctcagcgccgggcaggaaagcgtcgacaccatc
gagcacctcacctacaccgtcgacccgatgaccagggaccgggcgctcgtgcggctgatc
gagatggaaaacccggactcggccatcatcttcgccaacaccaaacgcgacgtcgagtac
ctcacccagttcctgcgcaactacggccacgacgccgacgagatctcgggcgatctctcg
cagcagcagcgagagaaggtcatggaccagatccgggacggcgagctgcgcttcctggtg
gccacggatgtggcggcccgtggcatcgacatctcggacctgagccacgtcttcatgtac
gacgtgccgcaggacccggagtactacctgcaccgcgccggacgcacgggccgcatcggc
aaatccggccgggtcatcgtgctggtgacgccggtggacaagaacaccatgctgcgcatc
gcccgccgctacggcttcgaggtggaccagcgcgagctgccctcggacgaggacgtacgc
gcccgcatcagcgagcggctgacggtgcaactcgaggagcgcctccgctcgcgcagcaac
ctggagaaggaacgtatgcagcgcttcgtgccgctggccgaggagctggcacgcgaggaa
ccggaactgctggccatgctgctggacgagctctaccatcgctcgctgcatgcccctgcc
cgtcccctctcggccgaggaggaggccgaacgcaagcagcaccgccagcgaccgaaatcc
gaacgcgggcgtggcggtcgcggtggcggtcgcgggggcagccgcgggggccgtggtgga
ggccgtcgtgggggtggccggggccgcaaaggacactga
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