Rhinopithecus bieti (black snub-nosed monkey): 108513153
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Entry
108513153 CDS
T04641
Symbol
COL5A1
Name
(RefSeq) collagen alpha-1(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb04820
Cytoskeleton in muscle cells
rbb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108513153 (COL5A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
108513153 (COL5A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rbb00536
]
108513153 (COL5A1)
Glycosaminoglycan binding proteins [BR:
rbb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108513153 (COL5A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
108513153
NCBI-ProteinID:
XP_017704308
LinkDB
All DBs
Position
Unknown
AA seq
1641 aa
AA seq
DB search
MIDVNGIIVFGTRILDEEVFEGDIQQLLFVSDHRAAYDYCEHYSPDCDTAVPDTPQSQDP
NPDEYYTEGDGEGETYYYEYPYYEDPEDLGKEPTPSKKPVEAAKETTAVPEEPTPTPTEA
APMPETSEAAGKEEDPGIGDYDYLPSEDYYTPLPYEDLTYGEGEENPDQPTDPGAGAEIP
TSTAGTSNSSNPAPPPGEGADDLEGEFTEETIRNLDENYYDPYYDPTNSPSEIGPGMPAN
QDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGPPGTMGPTGQVGDPGE
RGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQESQAQAILQQARLAL
RGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQGPPGPAGKPGRRGRAGSDGA
RGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGDRGDDGEVGPRGLPGE
PGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGA
IGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGA
DGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNGDPGP
LGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGP
RGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGH
PGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGT
KGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGA
AGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGD
KGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGP
RGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGN
PGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGS
PGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGP
AGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGP
DGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGE
QGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLP
IQASRTRRNIDASQLLDDGNGENYVDYADGMEEIFGSLNSLKLEIEQMKRPLGTPQNPAR
TCKDLQLCHPDFPDGEYWVDPNQGCSRDSFKVYCNFTAGGSTCVFPDKKSEGARITSWPK
ENPGSWFSEFKRGKLLSYVDAEGNPVGVVQMTFLRLLSASAHQNVTYHCYQSVAWQDAAT
GSYDKAIRFLGSNDEEMSYDNNPYIRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMF
NDFGEASQKFGFEVGPACFMG
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgatagacgtcaacggcatcatcgtgtttggcacccggatcctggatgaggaggtgttt
gagggtgacatccagcagctgctctttgtctcggaccaccgggcagcttatgattactgc
gagcactatagccctgactgtgacaccgcagtacctgacaccccacagtcacaggacccc
aatccagatgaatattacacggaaggagacggcgagggtgagacgtattactacgaatac
ccttactatgaagaccccgaagacctggggaaggaacccacccccagcaagaagcccgtg
gaagctgccaaagaaaccacagcggtccccgaggagccgaccccgacccccacggaagcg
gctcccatgcctgaaaccagtgaagcggctgggaaggaagaggaccctggcatcggcgac
tatgactatctgcccagcgaggactactacactcccttgccttacgaggacctcacctat
ggcgagggggaggagaaccccgaccagcccacagatccaggcgccggggccgagattccc
accagcaccgccggcacctctaactcctccaacccagctccgcctccaggggaaggtgcg
gatgacttggagggggagttcactgaggaaacaatcaggaaccttgacgagaactattac
gacccttactatgaccccaccaactccccgtcggagattgggccaggaatgccagcgaac
caggataccatctatgaagggattggaggacctcggggcgagaaaggtcaaaaaggggaa
ccagcgatcatcgagccgggcatgctcatcgagggcccgcccggcccagaaggccccgcg
ggtcttcccggacctccaggaaccatgggtcctactggccaagttggggaccctggagaa
aggggcccccctggacgcccaggccttcctggggccgatggcctgcccggtcctccagga
accatgctcatgctacccttccggtttggaggtggtggcgatgcgggctccaaaggtccc
atggtctcagcccaggagtcccaggcgcaagccattctccagcaggccaggttggcactg
aggggaccagctggcccaatgggtctcacagggagacctggccctgtgggtccccctggg
agcggaggtttgaagggcgagccgggagacgtggggcctcagggtcctcgaggtgtgcaa
ggcccgcctggtccagccgggaagcccggaagacggggtcgggctgggagtgacggagcc
agaggaatgcctgggcaaactggccccaagggcgaccggggtttcgatggcctggctggg
ttgccgggcgagaagggccacaggggtgaccctggtccttccggcccaccaggacctccg
ggagatgacggagacaggggtgatgacggagaagttgggcccagggggctgcctggggag
cccgggccacgtggtctgcttgggcctaaggggcctccaggtcctcccggacctcccggt
gtaacgggtatggacggccagccggggccgaaaggaaatgtgggtccccagggagagcct
ggccccccaggacagcagggtaatccaggtgcccagggtcttccaggcccccagggtgca
attggtcctccaggagaaaagggtcccttgggtaaaccaggccttccaggaatgcccggt
gctgacggacccccgggacaccctggcaaagaaggccctccaggagagaaaggaggtcag
ggtccacctggcccccagggtccaatcggctacccaggtcctcgaggagtcaagggggcc
gatggcatccgtggtctgaagggcacgaagggtgagaagggtgaagatggctttcctggg
tttaaaggagacatgggcatcaagggtgatcggggggagatcggcccacccggtcccagg
ggagaagatggccctgaaggcccgaagggtcgtggaggtcccaatggtgatcctggtcct
ctgggcccccctggggagaagggaaaactcggagtcccagggttaccagggtacccagga
agacaaggaccaaagggctctattggattccctggatttcctggcgccaatggagagaag
ggcggcagggggacccctggaaagccgggaccacgggggcagcgaggcccaacgggtcca
aggggtgaaagaggcccccggggcatcactgggaaacctggccccaagggcaactccgga
ggtgacggcccagctggccctcctggtgaacggggacccaacggaccccagggacccacg
ggatttcctggaccaaagggcccccctggccctccaggcaaggatggactccctgggcac
cctggacagagaggcgagactggtttccaaggcaagactggccctccaggacccccaggc
gtggtcggccctcagggtcccacgggagaaacgggcccaatgggtgagcgtggccaccct
gggccccccggaccccccggtgaacaggggcttccgggccttgctggaaaagaagggacg
aagggtgacccaggccccgcaggcctccctgggaaagatggccctccaggattacgtggt
ttccctggggaccgagggcttcctggtccagtgggagctcttggactgaaaggcaatgaa
gggcctcctggcccaccaggccctgcgggatctccaggggagagaggtccagccggagcc
gctgggcccattggaattccagggagacctgggccccagggacccccagggccagcagga
gagaaaggggctcctggtgagaaaggcccccaaggcccagctggccgagacggtctccag
ggtcctgtggggctcccgggtccagctggccctgtgggtccccctggagaagacggagat
aagggagagatcggggagccagggcagaaaggaagcaaaggggacaaaggagagcagggt
cctcccgggcctacaggtcctcaaggccccatcggacagccgggtccctctggagctgac
ggcgagccagggcctcggggccagcagggcctttttgggcagaaaggtgatgaaggtccc
agaggtttccctggaccccccgggccagtggggctgcagggtttgccaggacctccgggt
gagaagggtgagacaggagacgtgggccagatgggccccccaggtccccctggcccccga
ggaccctctggagctccaggtgctgatggcccacaaggtcccccaggtggaataggaaac
cctggtgcagtgggagagaagggcgagcccggcgaagcaggcgagcctggccttccagga
gaaggcggccccccgggacccaaaggagaaaggggagagaagggcgagtcgggcccttcg
ggtgctgctggaccccctggacccaaaggccctcccggagacgatggtcccaaaggcagc
cctggcccagtgggttttcctggagatcccggtccccctggagagcctggccccgcgggt
caagatggtccccccggtgacaaaggagacgatggtgaacccgggcagacgggatccccc
ggccctactggtgaaccaggtccatctgggcctccaggaaaaaggggtcccccgggccct
gcaggccccgaaggcagacagggagagaaaggggccaagggagaagccggcttggaaggc
cctcctgggaagactggccccatcggcccccagggggcccctgggaagcccggacccgat
ggccttcgcggaatccctggccctgtgggtgaacaaggtctcccaggatccccaggcccg
gatggtccccccggccccatgggtcccccaggacttcccggcctcaaaggagattctggt
cccaaaggcgaaaagggtcatccaggcctgatcgggctcatcggtcctccgggtgaacag
ggtgagaagggtgaccgcggtctccccggcccccagggctcctccggtcctaagggagaa
cagggtatcactggtccttctggcccgattgggcctcctgggccccctggtctgccgggt
ccacctggtccaaaaggtgctaagggctcctcgggtccgactggcccgaagggtgaggca
ggccacccaggacccccaggccccccgggccccccaggagaggtcatccagcccctgcca
atccaggcatccaggacgcggcggaacatcgacgccagccagctgctggacgacgggaat
ggcgagaactacgtggactacgcggacggcatggaagagatctttggctctctcaactcc
ctgaagctggagatcgagcagatgaagcggcccctgggcacgccgcagaaccccgcccgc
acctgcaaggacctgcagctctgccaccccgacttcccagatggtgaatactgggtcgat
cctaaccaaggatgctccagagattccttcaaggtttactgcaacttcacagccgggggg
tcgacatgcgtcttccctgacaagaagtccgaaggggccagaatcacttcttggcccaaa
gaaaacccgggctcctggttcagtgaattcaagcgtgggaaactgctctcctacgtggac
gccgagggcaaccccgtgggcgtggtacagatgaccttcctgcggctgctgagtgcctca
gcccaccagaacgtcacctaccactgctaccagtcagtggcctggcaggacgcagccaca
ggcagctacgacaaggccatccgcttcctgggctccaacgacgaggagatgtcctatgat
aacaacccctacatccgcgccctggtggacggctgtgcaaccaagaaaggctaccagaag
acggttctggagatcgacacccccaaagtggagcaggtgcccatcgtggacatcatgttc
aatgacttcggtgaagcgtcacagaaatttggatttgaagtggggccagcttgcttcatg
ggctag
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