Rhinopithecus bieti (black snub-nosed monkey): 108529170
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Entry
108529170 CDS
T04641
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108529170 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rbb03041
]
108529170 (DHX38)
Enzymes [BR:
rbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108529170 (DHX38)
Spliceosome [BR:
rbb03041
]
Complex C
Other components
Step II factors
108529170 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
Flavi_DEAD
AAA_30
Microtub_bd
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
108529170
NCBI-ProteinID:
XP_017726791
LinkDB
All DBs
Position
Unknown
AA seq
1318 aa
AA seq
DB search
MLHPSCPPWPSSLLWSNPAAWSGLPEIQECCLEWPCSLSQASAVTHPRLSPSPSRAPCVF
LCSLTVLFIPGNLVGDLFYWNVSFREIPDPVMGDTSEDASIHRLEGTDLDSQVGGLICKT
KSAASEQHVFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSKISSYKDWEESKDDQ
KDAEEEGGDQAGRNIRKDRHYRSARVETPSHPGGVSEEFWERSRQRERERREHGVYASSK
EEKDWKKEKSRDRDYDRKRDRDDRDRSRHSSRSERDGGSERSSRRNEPESPRHRPKDAAT
PSRSTWEEEDSGYGSSRRSQWESPSPTPSYRDSERSHRLSTRDRDRSVRGKYSDDTPLPT
PSYKYNEWADDRRHLGSTPRLSRGRGRREEGEEGISFDTEEERQQWEDDQRQADRDWYMM
DEGYDEFHNPLAYSSEDYVRRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVH
RLEVDEDFEEDNAAKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQ
TVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKEEEPDKAVTEDGKVDYRTEQKFADHM
KKKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYL
HEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMT
DGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDA
EKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPG
QEDIEVTSDQIVEHLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAE
TSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLY
TQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWI
LGALDNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKG
REEESDQIREKFAVPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLK
DIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFG
MGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEA
SAMEEEMALAEEQLRARRQEQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacccgtcctgcccgccttggccttcctctttgctctggtcaaatcctgctgcc
tggagcggcctccctgagatccaggaatgctgcctggagtggccttgctccctctcccag
gcctccgctgtaacccaccccagactgtctccgagcccgagtagggctccttgtgtcttc
ctctgctctctcacagtgttatttataccaggcaatctggtgggcgatctcttctactgg
aacgtcagcttcagagaaatcccagatcctgtgatgggggacaccagtgaggatgcctcg
atccatcgattggaaggcactgatctggactctcaggttggtggtcttatttgcaagacc
aaaagtgcggccagcgagcagcatgtcttcaaggcccctgctccccgcccttcattactg
ggactggacttgctggcttccctgaaacggagggagcgagaggagaaggacgatggggag
gacaagaagaagtccaaaatctcttcctacaaggactgggaagagagtaaggatgaccag
aaggatgccgaggaagagggcggtgaccaggctggccgaaatatccggaaagacagacat
tatcgatctgctcgggtagaaactccatcccatccagggggtgtgagcgaagagttttgg
gaacgcagtcggcagagagagcgggagcggcgcgaacatggtgtctatgcctcatccaaa
gaagaaaaggattggaagaaggagaaatcgcgggatcgagactatgaccgcaagagggac
agagatgaccgggatagaagtaggcacagcagcagatcggagcgagatggagggtcagag
cgtagcagcagaagaaatgagcctgagagcccacgacatcgacctaaagatgcagccacc
ccttcaaggtctacctgggaggaagaggacagtggctatggctcctcaaggcgctcccag
tgggaatcgccctccccgacgccttcctatcgggattctgagcggagccatcggctgtcc
actcgagatcgagacaggtctgtgaggggcaagtactcggatgacacgcctctgccaact
ccctcctacaaatacaatgagtgggccgatgacagaagacacttggggtccaccccacgt
ctgtccaggggtcgaggaaggcgcgaggaaggcgaagaaggaatttcatttgacacggag
gaggagcggcagcagtgggaggatgaccagaggcaagccgatcgggattggtacatgatg
gacgagggctatgatgagttccacaacccactggcctactcctctgaggactatgtgagg
aggcgggagcagcacctgcataaacagaagcagaagcgcatttcagctcagcggagacag
atcaatgaggataacgagcgctgggagacaaaccgcatgctcaccagtggggtggtccat
cggctggaggtggacgaggattttgaagaggacaatgcagccaaggtgcatctgatggtg
cacaatctggtgcctccctttctggatgggcgcattgtcttcaccaagcagccggagccg
gtgatcccagtgaaggacgccacttctgacctggccatcattgctcggaaaggcagccaa
acagtgcggaagcacagggagcagaaggagcgcaagaaggctcagcacaaacactgggaa
ctggctgggaccaaactgggagatataatgggtgtcaagaaggaggaagaaccagataaa
gctgtgacggaggatgggaaggtggactacaggacagagcagaagtttgcagatcacatg
aagaaaaagagtgaagccagcagtgaatttgcaaagaagaagtccatcctggagcagagg
cagtacctgcccatctttgcagtgcaacaggagctgctcactattatcagagacaacagc
atcgtgatcgtggttggggagacagggagtggtaagaccactcagctgacacagtacctg
catgaagatggttacacagactatgggatgattgggtgtacccagccccggcgtgtagct
gccatgtcagtggccaagagagtcagtgaagagatggggggcaaccttggtgaggaggtg
ggctatgccatccgctttgaagactgcacttcagagaacaccttgatcaaatacatgact
gatgggatcctgctccgagagtccctccgggaagccgacctggatcactacagcgccatc
atcatggatgaggcccacgagcgctccctcaacactgacgtgctcttcgggctgctccgg
gaggtggtggctcggcgctcagacctgaagctcatcgtcacatcagccacgatggatgca
gagaagtttgctgccttttttgggaatgtccccatcttccacatccctggccgtaccttc
cctgttgacattctcttcagcaagaccccacaggaggattacgtggaggctgcagtgaag
cagtccttgcaggtacacctgtcgggggcccctggggacatccttatcttcatgcctggc
caggaggacattgaggtgacctcagaccagattgtggagcatctggaggaactggagaat
gcacctgccctagccgtgctgcccatctactctcagctgccttctgacctccaggccaaa
atcttccagaaggctccagatggcgttcggaagtgcattgttgccaccaacattgccgag
acgtctctgactgttgatggcatcatgtttgttatcgattctggttattgcaaattaaag
gtcttcaaccccaggattggcatggatgctctgcagatctatcccattagccaggccaat
gccaaccagcggtcagggcgagccggcaggacgggcccaggtcagtgtttcaggctctac
acccagagcgcctacaagaatgagctcctgaccaccacagtgcccgagatccagaggacc
aacctggccaacgtggtgctgctgctcaagtcccttggggtgcaggacctgctgcagttc
cacttcatggacccgcccccggaggacaacatgctcaactccatgtatcagctctggatc
ctcggggccctggacaacacaggtggtctgacctctaccgggcggttgatggtggagttc
ccgctggaccctgccctgtccaagatgctcatcgtgtcctgtgacatgggctgcagttcc
gagatcttgctcatcgtctccatgctctccgtcccggccatcttctacaggcccaagggt
cgagaggaggagagtgatcaaatccgggagaagttcgctgtccccgagagcgatcatttg
acctacctgaatgtctacctgcagtggaagaacaataattactctaccatctggtgtaac
gatcatttcatccatgctaaggccatgcggaaggtccgggaggtgcgagctcaactcaag
gacatcatggtgcagcagcggatgagcctggcctcatgtggcactgactgggacatcgtc
aggaagtgcatctgtgctgcctatttccaccaagcagccaagctcaagggaatcggggag
tacgtgaacatccgcacagggatgccctgccacttgcaccccaccagctccctttttgga
atgggctacaccccggattacatagtgtatcacgagttggtcatgaccaccaaggagtac
atgcagtgcgtgaccgctgtggacggggagtggctggcagagctgggccccatgttctat
agcgtgaaacaggcgggcaagtcacggcaggagaaccgtcgtcgggccaaagaggaagcc
tctgccatggaggaggagatggcgctggccgaggaacagctgcgagcacggcggcaggag
caggagaagcgcagccccctgggcagtgtcagatctacgaagatctacactccaggccgg
aaagagcaaggggagcctatgacccctcgccgcacgccagcccgctttggtctgtga
DBGET
integrated database retrieval system
