Rhinopithecus bieti (black snub-nosed monkey): 108536601
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Entry
108536601 CDS
T04641
Symbol
CPSF1
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108536601 (CPSF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbb03021
]
108536601 (CPSF1)
03019 Messenger RNA biogenesis [BR:
rbb03019
]
108536601 (CPSF1)
Transcription machinery [BR:
rbb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108536601 (CPSF1)
Messenger RNA biogenesis [BR:
rbb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108536601 (CPSF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
MMS1_N
UspB
Motif
Other DBs
NCBI-GeneID:
108536601
NCBI-ProteinID:
XP_017738997
LinkDB
All DBs
Position
Unknown
AA seq
1452 aa
AA seq
DB search
MYAVYKQAHPPTGLEFAMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGK
AHREKLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEG
QRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVAL
NSLTTGTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYTEKLQEPPASAVREAADKEEPPSK
KKRVDATTSWSAGGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCANAAM
GEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQVCEQKSIRPQVVTTFELPGCYDMW
TVIAPVRKEEEDNPKGEVTEQEPRSPEADDDGRRHGFLILSREDSTMILQTGQEIMELDT
SGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHFIPVDLGAPIVQCAVADPYVV
IMSAEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGA
RDELGGRIGSEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPF
RAEPTHWCLLVRENGTMEIYQLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEA
TRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAFPHDSQLGQGNLKVRFKKVPH
NINFREKKPKPSKKKAEGGGTEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTG
RGALRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIP
LRCTAHYVAYHVESKVYAVATSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQ
LISPVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGLKGYVAAGTCLMQGEEVTCRG
RILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRA
SELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYS
VDFMVDNAQLGFLVSDRDRNLMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCR
GATEGLSKKSVVWENKHITWFGEDLPAAADAAECADHHASAPRRPQPPCLPDAARGPPHP
PECCAQRAGWRAAQPLSVPEHHGAQRAGEEDRHHARHNPGRLAGDGPRHRPLLAPWMPLP
PAPPHYLPPHFV
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccgtgtacaaacaggcgcatccgcccaccggcctggagttcgccatgtactgc
aacttcttcaacaacagcgagcgcaacctcgtggtggccgggacctcgcagctctacgtg
taccgcctcaatcgcgacgccgaggctctgaccaagaatgacaggagcacagaggggaag
gcccaccgggagaagctcgagctcgctgcctccttctctttctttggcaacgtcatgtcc
atggccagcgtgcagctggcaggagccaagcgggatgccctgctcctaagcttcaaggat
gccaagctgtctgtggtggaatacgacccgggtacccatgacctgaagaccctgtcgctg
cactactttgaggagcctgagcttcgggatgggtttgtgcagaatgtacacacgccgcga
gtgcgggtggaccccgatgggcgctgcgcagccatgcttgtctacggcacgcgactggta
gtcctgcccttccgcagggagagcctggccgaggagcacgaggggctcgtgggtgagggg
cagaggtccagcttcctgcccagctacatcatcgatgtccgggccctagacgagaagctg
ctgaacatcatcgacctgcagttcttgcatggctactacgagcccaccctgctcatcctg
ttcgagcccaaccagacctggcctgggcgcgtggctgtgcggcaggatacgtgctccatc
gtggccatctcactgaacatcacgcagaaggtgcaccccgtcatctggtccctcaccagc
ctgccctttgactgcacccaggctctggctgtgcccaagcccataggtggggtggtggtc
tttgccgtcaactcgctgttgtacctgaaccagagcgtccccccgtacggtgtggctctc
aacagcctcaccacaggcaccacagctttcccactacgcacccaggagggtgtgcgaatc
accctggactgcgcccaggccaccttcatctcctacgacaagatggtcatctccctcaag
ggcggcgagatctacgtgctgaccctcatcaccgacggcatgcgcagtgtccgagcgttc
cactttgacaaggcggccgccagcgtcctcaccaccagcatggtcaccatggagcccggg
tacctgttcctgggttctcgcctgggcaactcccttctcctcaagtacacagagaagctg
caggagcccccggccagtgctgtccgtgaggctgccgacaaggaagagcctccctcaaag
aagaagcgagtggacgcgacgaccagctggtcagctgggggtaaatcggtgccacaggac
gaggtggatgagattgaagtgtacggcagcgaggcccagtcgggcacacagctggccacc
tattcctttgaggtgtgtgacagcatccttaacatcggaccctgcgccaacgctgccatg
ggcgagcctgccttcctctctgaagagtttcagaacagccctgagccggacctggagatt
gtggtttgctctggccacgggaagaacggggctctgtcagtgctgcaggtgtgtgagcag
aagagcatccggccccaggtggtgacaacctttgagcttcccggctgctacgacatgtgg
acagtcatcgccccagtgcgtaaggaggaggaggacaatcccaagggggaggtcacagag
caggaacccagaagccctgaagcagacgatgacggccgtagacatggattcctgattctg
agccgggaagactcaaccatgattctgcagacggggcaggagatcatggagctggacacc
agtggctttgccacgcagggccccacggtctttgctgggaacatcggggacaaccgctac
attgtccaagtgtcaccgctgggcatccgcctgctagaaggagtgaatcagctgcacttc
atccctgtggacctgggcgcccccatagtgcagtgcgccgtggccgacccctatgtggtc
atcatgagtgccgagggccacgtcaccatgttcctgctgaaaagtgactcctacggtggc
cgccaccaccgcctggcgctgcacaagcctccgctgcaccatcagtccaaggtcatcacg
ctgtgcctgtaccgagacctcagcggcatgttcaccactgagagccgcctgggtggggcc
cgtgacgagctgggaggccgcatcggctcggaggccgagggcctgggctcggagactagc
cccaccgtggatgacgaggaggagatgctgtatggggattcgggctccctcttcagcccc
agcaaggaggaggcccgaagaagcagccaaccccctgctgaccgggaccctgcacccttc
cgggcagagcccacccactggtgcctgctggtgcgggagaatggcaccatggagatatac
cagctccccgactggcggctggtgttcctggtgaagaacttccccgtggggcagcgggtc
ctcgtggacagctcctttggacagcccactacacagggcgaggcccgcagggaggaggcc
acgcgccagggggagctgcccctcgtcaaggaggtgctgctggtggcgctgggcagccgc
cagagcaggccctacctgctggtgcatgtggaccaggagctgctcatctacgaggccttt
ccccacgactctcagcttggccagggcaatctcaaagtccgctttaagaaggtccctcac
aatatcaacttccgtgagaagaagccaaagccatccaagaagaaagcagaaggtggcggc
acggaggagggggctggggcccggggccgcgtggcgcgtttccgctacttcgaggatatt
tatggctactcaggggtgttcatctgcggcccctcccctcactggctgctggtgactggc
cgaggggctctgcggctgcaccccatggccatcgatggccctgtcgactcttttgctcca
ttccacaatgtcaactgtccccgtggcttcctgtacttcaacagacagggcgagctgagg
atcagtgtcctgcctgcctatctgtcctatgatgccccatggcctgtcaggaagatccca
ctgcgctgcacggcccactatgtggcttaccatgtggagtccaaggtgtatgcggtagcc
accagcaccaacacaccgtgtgcccgcatcccacgcatgactggcgaggagaaggagttt
gagaccatcgagagagatgagcggtacatccacccccagcaggaggctttctccatccag
ctcatctccccagtcagctgggaggctattcccaacgccaggatcgagctgcaggagtgg
gagcacgtgacctgcatgaagacagtgtcgctgcgcagtgaggagactgtgtcgggcctc
aaaggctacgtggccgccgggacctgcctcatgcagggggaggaggtcacgtgccgaggg
cggatcttgatcatggatgtgattgaggtggtgcctgagcccggccagcccttgaccaag
aacaagttcaaagtcctttacgagaaggagcagaaggggcctgtgactgccctttgccac
tgcaacggtcacctggtgtcggccatcggccagaagattttcctgtggagcctgcgggcc
agtgagctgacaggcatggccttcatcgacacgcagctgtacatccaccagatgatcagc
gtcaagaacttcatcctggcagccgacgtcatgaagagcatttcgctgctgcgctaccag
gaggagagcaagacactgagcctggtgtcacgggatgccaagcccctggaggtgtacagc
gtggacttcatggtggataatgcccagctgggttttctggtgtctgaccgcgaccgcaac
ctcatggtgtacatgtacctgccggaagccaaggagagttttgggggcatgcgcctgctg
cgcagggcggacttccacgtgggtgcccacgtgaacacgttctggaggaccccgtgccgg
ggggccactgaagggctcagcaaaaagtcagtcgtgtgggagaataagcacatcacgtgg
tttggagaagacctaccggcggctgctgatgctgcagaatgcgctgaccaccatgcttcc
gcaccacgccggcctcaacccccgtgccttccggatgctgcacgtggaccgccgcaccct
ccagaatgctgtgcgcaacgtgctggatggcgagctgctcaaccgctatctgtacctgag
caccatggagcgcagcgagctggcgaagaagatcggcaccacgcccgacataatcctgga
cgacttgctggagacggaccgcgtcaccgcccacttctagccccgtggatgccgttgcca
ccagcaccaccgcactacctcccaccccattttgtataa
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