Rhinopithecus bieti (black snub-nosed monkey): 108539779
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Entry
108539779 CDS
T04641
Symbol
COL6A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
rbb
Rhinopithecus bieti (black snub-nosed monkey)
Pathway
rbb04151
PI3K-Akt signaling pathway
rbb04510
Focal adhesion
rbb04512
ECM-receptor interaction
rbb04820
Cytoskeleton in muscle cells
rbb04974
Protein digestion and absorption
rbb05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
rbb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
108539779 (COL6A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108539779 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108539779 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108539779 (COL6A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
108539779 (COL6A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
108539779 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rbb04147
]
108539779 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
rbb00536
]
108539779 (COL6A1)
Exosome [BR:
rbb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108539779 (COL6A1)
Glycosaminoglycan binding proteins [BR:
rbb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108539779 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
108539779 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
YcaO
Motif
Other DBs
NCBI-GeneID:
108539779
NCBI-ProteinID:
XP_017744152
LinkDB
All DBs
Position
Unknown
AA seq
1028 aa
AA seq
DB search
MRAAGALLPLLLQACWTAGQDEPETPRAVAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIQGLTRMPGDRDTLKSKVDAI
KYFGKGTYTDCAIKKGLEQLLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGQSRDAEEVISQTIDTIVDMIK
NNVEQVCCSFECQPARGPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGM
KGEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGVKGEMGYPGLPGCKGSPGFDGIQGAPGP
KGDPGAFGLKGEKGEPGADGEAGRPGSSGPPGDEGEPGEPGPPGEKGEAGDEGNPGPDGA
PGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGD
EGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGINGTK
GYPGLXGDEGEAGDPGDDNNDIAPRGVKGAKGYQGPEGPQGPPGHPGPPGPDECEILDII
MKMCSCCECKCGPIDLLFVLDSSESIGLQNFEIAKDFVVKVIDRLSRDELVKFEPGQSYA
GVVQYSHSQMQEHVSLRSPSIRNVQELKEAIKNLQWMAGGTFTGEALQYTRDQLLPPSPN
NRIALVITDGRSDTQRDTTPLNVLCSPGVQVVSVGIKDVFDFVPGSDQLNVISCQGLAPS
QGRAGLSLVKENYAELLEDAFLKNVTAQICIDKKCPDYTCPITFSSPTDITILLDGSASV
GSHNFDTTKRFAKRLAERFLMADRTDPAHDVRVAVVQYSGTGQQRPERASLQFLQNYTAL
ASAVDAMDFINDATDVNDALGYVTRFYREASSGAAKKRLLLFSDGNSQGATPAAIEKAVQ
EAQRAGIEIFVVVVGRQVNEPHIRVLVTGKTAEYDVAYGERHLFRVPSYQALLHGVFHQT
VSRKVALG
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgagggcagccggcgctctgctgcccctgctgttgcaggcctgctggacggctgggcag
gatgagccagagacccccagggcggtggccttccaggactgccctgtggacctgttcttt
gtgctggacacctctgagagtgtggccctgaggctgaagccctacggggccctcgtggac
aaagttaagtccttcaccaagcgtttcatcgacaacctgagggacaggtactaccgctgt
gaccgaaacctggtgtggaacgcgggtgcactgcactacagtgacgaggtggagatcatc
caaggcctcacgcgcatgcccggtgaccgcgacacgctcaaaagcaaagtggacgccatc
aagtattttgggaagggcacctacactgactgtgccatcaagaaggggctggagcagctt
cttgtcgggggctcccacctaaaggagaacaagtacctgattgtggtgactgatgggcac
cccctggagggctacaaggagccatgcggggggctggaggacgccgtgaacgaggccaag
cacctgggcatcaaagtcttctcagtggccatcacgcctgaccacctggagccgcgtctc
agcatcattgccacggaccacacgtaccggcgcaacttcacggcggctgactggggccag
agccgcgacgcggaggaggtcatcagccagaccatcgacaccatcgtggacatgatcaaa
aataacgtggagcaagtgtgctgctccttcgaatgccagcctgcaagaggacctccgggg
ctccggggcgaccccggcttcgagggagaacgaggcaagccagggctcccgggagagaag
ggagaagccggagatcctggaagacccggggacctcggacctgttgggtaccaggggatg
aagggagaaaaagggagccgtggggagaagggctccaggggacccaagggctacaaggga
gagaagggcaagcgtggtatcgacggggtggatggcgtgaagggggagatggggtaccca
ggcctgccaggctgcaagggctcgcccgggtttgacggcatccaaggagcccccggaccc
aagggagaccccggcgcctttggactgaaaggagaaaagggtgagcctggagctgacggg
gaggcggggagaccagggagctcgggaccacctggagacgagggcgagccaggagagcct
ggtcctcccggagagaaaggagaggcgggcgacgaggggaacccaggacctgacggtgcc
cccggggagcggggcggccctggagagagaggaccacgggggaccccaggcacacgggga
ccaagaggagaccctggtgaagctggcccacaaggtgatcagggaagagaaggccccgtt
ggtgtccctggagacccgggagaggctggccctatcggacctaaaggctaccgaggcgat
gagggtcccccaggatctgagggtgccagaggagccccaggacctgctggaccccctgga
gaccctgggctgatgggtgagaggggtgaagacggcccccctggaaatggcaccgagggc
ttccctggcttccccgggtatccgggcaacaggggccctcccgggataaacggcacgaag
ggctaccccggcctcnaaggggacgagggggaagccggggaccccggagacgacaacaac
gacattgcaccccgaggagtcaaaggagcaaagggttaccagggccccgagggcccccag
ggacccccaggacacccaggaccgcccgggccagacgaatgcgagattttggacatcatc
atgaaaatgtgctcttgctgtgaatgcaagtgcggccctatcgacctgctctttgtactg
gacagctcagagagcatcggcctgcagaacttcgagattgccaaggacttcgttgtcaag
gtcatcgaccggttgagccgggacgagctggtcaagtttgagccgggacagtcgtacgca
ggtgtggtgcagtacagccacagccagatgcaggagcacgtgagcctgcgcagccccagc
atccggaatgtgcaggagctcaaggaagccatcaagaacctgcagtggatggcgggtggc
actttcacgggggaggccctgcagtacacacgggaccagctgctgccacccagcccaaac
aaccgcattgccctggtcatcactgacgggcgctcagacacccagagggacaccacaccg
ctcaacgtgctctgcagtccgggcgtccaggtggtctccgtgggcatcaaggacgtgttt
gacttcgtccccggctccgaccagctcaatgtcatttcttgccaaggcctggcaccatcc
cagggccgggccggcctctcactggtcaaggagaactatgcagagctgctggaggacgcc
ttcctgaagaatgtcaccgcccagatctgcatagataagaagtgtccagattacacctgc
cccatcacgttctcctcccccactgacatcaccatcctgctggacggctctgccagtgtg
ggcagccacaacttcgacaccaccaagcgcttcgccaagcgcctggccgagcgcttcctc
atggcggacaggacggaccccgcccatgatgtgcgggtggctgtggtgcagtacagcggc
acaggccagcagcggccagagcgggcgtcgctgcagttcctgcagaactacacggccctg
gccagtgctgtcgatgccatggactttatcaacgacgccacggacgtcaacgacgccctg
ggctatgtgacccgcttctaccgcgaggcctcgtctggcgcagctaagaagaggctgctg
ctcttctcagatggcaactcacagggcgccacgcccgcggccatcgagaaggctgtgcag
gaggcccagcgagcagggattgagatctttgtggtggtcgtgggccgccaggtgaatgag
ccccacatccgcgtcctggtcaccggcaagacggccgagtacgacgtggcctacggcgag
cgccacctgttccgtgtccccagctaccaggccctgctgcatggtgtcttccaccagacc
gtctccaggaaggtggcactgggctag
DBGET
integrated database retrieval system
