KEGG   Rhizobiales bacterium NRL2: TEF_06740Help
Entry
TEF_06740         CDS       T04419                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rbm  Rhizobiales bacterium NRL2
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rbm00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    TEF_06740
Enzymes [BR:rbm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TEF_06740
DNA repair and recombination proteins [BR:rbm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TEF_06740
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(1460305..1462863)
Genome map
AA seq 852 aa AA seqDB search
MASTRNLKTYQSKRDFRESPEPRGSVSKTDGRLYVIQSHDASRHHYDFRLELDGVLLSWA
IPKGPSLDPSDKRLAVRTEDHPVDYGGFEGVIPKGYGAGTVMLWDRGEWEAKDDPREALE
KGELKFTLKGARLKGGWALVRMKGGKDGDKENWLLVKEKDDHADPETEPGERWTTSAKSR
RKMKTIADEGQDLKKGKRYSPGGRAATKPKNSSSGQGGGSSRAKGKGKNAGTENGAMALE
FIEPQLATLVDDPPEGEEWLHEIKYDGYRIQAQIKDGEVRLISRNGKDWTDRYPDVAGAL
KKLKIDDAVMDGELVALDDRGHSNFSRLQQSQRQGDVSLRYYVFDLLHLNAKDLRKSPLT
DRKAKLADVVPAKGERVRYSDHIEGSGEAIIEKACDMGMEGIVSKKADAPYKSGRGRGWL
KSKCVGDDEFVIVGYRKSDKKGRPFSSLLLGAWDGDELVYRGRVGTGYDARDFDELGGKL
DRLSRKTCPLADPPSEARRGAVWVTPKLVAQVAYTEMTGDGLLRHPSYKGLREDKAAREV
RTGSRQSGDRENEMELENVRITSPDKVLFPEQGATKRRVAEYLHGNAERILTWLADRPLT
FVRCPDGRDDECFFQQHHTASTPDEIGWVEIEESGGKTARHLVISDARGLVAAAQIAALE
FHLWGARKDRIDRPERIVFDLDPDEGLDFRDVRAAARELKDILEGAGLTSYPMLTGGKGI
HVIVPIQRRRGWDDVKAFAAGLARRMAEADPDRYVAQASKAKRKGRIFIDWLRNERGATA
IAPYSPRARAGAPVATPVGWDELGRIDRANRYTLDNIDARLKRLKSDPWEGYGEARQSVT
DEHLRFVEDASG
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
atggcaagcacccgcaatctgaaaacctaccagtcgaagcgggacttccgcgagagccct
gaaccccgggggtcggtcagcaagaccgacgggcgcctctatgtcatccagtcccacgac
gccagccgtcaccactacgatttccgcctggaactggatggcgtgctgctgagctgggcc
atcccgaaggggccgagtctcgacccgtccgacaagcgcctcgccgtccgcaccgaggac
catccggtcgactatggcggcttcgaaggcgtgatcccgaagggctacggcgccggcacc
gtcatgctgtgggatcgcggcgaatgggaggcgaaggacgatccccgcgaagccctcgag
aagggcgagctgaaattcaccctgaagggcgcccggctgaagggcggttgggcgctggtc
cgcatgaaggggggaaaggacggcgacaaggagaactggctgctggtcaaggagaaggac
gaccacgcagacccggagaccgagcccggcgagcgctggaccaccagcgcgaagtcgcgg
cggaagatgaagaccatcgccgacgaaggccaggatctgaagaaggggaaacgctacagc
cccggcggccgggccgcgacgaagccgaagaattcctcttcgggacagggcggcggttcg
tcccgcgcgaagggcaaggggaagaacgccggaacggagaatggcgctatggccctggaa
ttcatcgaacctcagctggcgaccctggtcgacgacccgcctgaaggcgaggaatggctg
cacgagatcaagtatgacggctatcgcattcaggcgcagatcaaggatggcgaggtgcgc
ctgatcagccgcaacggcaaggactggacggatcgctatccggatgtggccggggcgctg
aagaaactgaaaatcgacgacgcggtcatggacggtgagttggtcgcgctggacgaccgc
ggccacagcaacttctcccggcttcagcagagccagcgccagggcgatgtttcgcttcgc
tactacgtcttcgacctgctgcatctgaacgcaaaggaccttcgcaagtcgcccctgacg
gaccgaaaggcgaaactggccgacgtcgtccccgcgaagggcgagcgcgtgcgctacagc
gaccacatcgaagggtccggcgaggcgatcatcgagaaggcctgcgacatgggcatggaa
ggcatcgtgtcgaagaaggccgatgcgccctacaagtcgggccgcgggcgcggctggctg
aagtcgaaatgcgtcggcgacgacgagttcgtcatcgtcggctaccgcaagtccgacaag
aagggccggcccttctcctccctgctgctgggcgcctgggacggcgacgagctggtctat
cgcgggcgcgtcggcaccggctacgacgcgcgggacttcgacgaactgggcggcaagctc
gaccggctgtcgcgcaagacctgtcccctcgccgatccaccctcggaagcccggcgcggc
gcggtctgggtcacgccgaagctggtcgcccaggtcgcctataccgagatgaccggcgac
gggctgttgcgccatcccagctacaagggcctgcgcgaggacaaggcggcgcgcgaggtg
cgcaccggttcacggcagtccggcgaccgggagaacgagatggaactggaaaacgtccgc
atcaccagtccggacaaggtgctgttccccgagcagggagcaaccaagcgccgggtggcc
gaatacctgcacggcaatgccgaacggatactgacctggctcgcggaccgtccgctgacc
ttcgtgcgctgtccggacggacgcgacgatgagtgcttcttccagcagcaccataccgcc
tcgaccccggacgagatcggatgggtggagatcgaggaaagcggcggcaagaccgcacgg
cacctggtcatttccgacgccagggggctggtcgcggcggcgcagatcgccgccctggag
tttcatctctggggcgcgcgcaaggaccggatcgaccggccggagcggatcgtcttcgat
ctcgacccggacgagggactggatttccgggacgtgcgcgcggccgcccgggagctgaag
gacatcctcgaaggcgcggggctgacatcatatcccatgctcaccggcggcaagggcatc
cacgtcatcgtacccatccagcgccggcgcggctgggacgacgtgaaggccttcgccgcc
ggcctggcgcgccggatggccgaggccgatcccgaccgctacgtggcccaggcctccaag
gcgaagcgcaagggccggatcttcatcgactggctgcgcaacgagcgtggcgccacggcc
atcgccccctattcgccccgcgcccgcgcgggcgcgcccgtggcgacgccggtcggctgg
gacgaactcggccgcatcgaccgggcgaaccgctacacgctggacaatatcgacgcgcgg
ctgaaacggctgaagtcggatccctgggaaggctatggcgaggcccgtcaatcggtgacc
gacgagcatctgcgtttcgtcgaagacgcgtccggatag

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