Rhizobiales bacterium NRL2: TEF_16510
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Entry
TEF_16510 CDS
T04419
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rbm
Rhizobiales bacterium NRL2
Pathway
rbm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TEF_16510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbm03400
]
TEF_16510
Enzymes [BR:
rbm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TEF_16510
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TEF_16510
DNA repair and recombination proteins [BR:
rbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TEF_16510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Motif
Other DBs
NCBI-ProteinID:
ANK82212
LinkDB
All DBs
Position
3548141..3548971
Genome browser
AA seq
276 aa
AA seq
DB search
MPELPEVETVRRGLERRLKGRVFSRVEVRRPDLRFPLPENMAERLTGRRVEALRRRAKYL
LFDLDDRQTLIGHLGMSGRMHIHDALPNAQRPHEHIVFVADDGTAVIFQDHRRFGFFDLA
KTSALESHRFFASLGPEPLDAAFDGAELSRRLAGKRTPIKAALLDQRIVAGLGNIYVCEA
LFRAGISPKRIAATVAGRRAERLVPEIKAVLEEAIAAGGSTLRDYVQASGELGYFQHDFR
VYGREGEPCRKPGCKGAVGRLVQSGRSTFHCGVCQR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaagtcgagaccgttcgtcgcggactggagcgccgcctgaagggg
cgcgtgttctcgcgtgtcgaggtgcgccggccggacctgcgcttccccctgcccgagaac
atggccgaacgcctgaccggccgccgtgtcgaggccctgcgccgccgcgccaagtacctg
ctgttcgatctcgacgaccgccagaccctgatcgggcatttgggcatgtcgggacggatg
cacatccacgacgccctgccgaacgcgcaacgcccgcacgagcacatcgtcttcgtagcc
gacgacggcacggcggtcatttttcaggatcaccgccgtttcggcttcttcgacctggcc
aagaccagcgcgctggaaagccaccgcttcttcgcctcgctgggtccggaaccgctggac
gccgccttcgacggcgccgagctgagccgtcgcctcgccggcaagcggacgccgatcaag
gccgcgctgctggatcagcggatcgtcgccggcctcggcaacatctatgtctgcgaagcg
ctgttccgcgccggcatctcgccgaagcggatcgccgccaccgtcgccggccggcgtgcg
gagcggctggtcccggaaatcaaggcggtgctggaggaagccatcgccgccggcggctcg
acgctgcgcgattatgtccaggcctccggcgaactgggttatttccagcacgacttccgg
gtctatggccgggagggcgagccgtgccggaagcccggctgcaagggcgcggtggggcga
ctggtgcagtccggccggtcgacgttccattgcggggtctgccagcgatga
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