KEGG   Rhodobiaceae bacterium SMS8: RHODOSMS8_00931
Entry
RHODOSMS8_00931   CDS       T05596                                 
Symbol
lpdC
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
rbs  Rhodobiaceae bacterium SMS8
Pathway
rbs00010  Glycolysis / Gluconeogenesis
rbs00020  Citrate cycle (TCA cycle)
rbs00260  Glycine, serine and threonine metabolism
rbs00280  Valine, leucine and isoleucine degradation
rbs00310  Lysine degradation
rbs00380  Tryptophan metabolism
rbs00620  Pyruvate metabolism
rbs00630  Glyoxylate and dicarboxylate metabolism
rbs00640  Propanoate metabolism
rbs00785  Lipoic acid metabolism
rbs01100  Metabolic pathways
rbs01110  Biosynthesis of secondary metabolites
rbs01120  Microbial metabolism in diverse environments
rbs01200  Carbon metabolism
rbs01210  2-Oxocarboxylic acid metabolism
rbs01240  Biosynthesis of cofactors
Module
rbs_M00009  Citrate cycle (TCA cycle, Krebs cycle)
rbs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rbs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
rbs_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:rbs00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    RHODOSMS8_00931 (lpdC)
   00020 Citrate cycle (TCA cycle)
    RHODOSMS8_00931 (lpdC)
   00620 Pyruvate metabolism
    RHODOSMS8_00931 (lpdC)
   00630 Glyoxylate and dicarboxylate metabolism
    RHODOSMS8_00931 (lpdC)
   00640 Propanoate metabolism
    RHODOSMS8_00931 (lpdC)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    RHODOSMS8_00931 (lpdC)
   00280 Valine, leucine and isoleucine degradation
    RHODOSMS8_00931 (lpdC)
   00310 Lysine degradation
    RHODOSMS8_00931 (lpdC)
   00380 Tryptophan metabolism
    RHODOSMS8_00931 (lpdC)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    RHODOSMS8_00931 (lpdC)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rbs04147]
    RHODOSMS8_00931 (lpdC)
Enzymes [BR:rbs01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     RHODOSMS8_00931 (lpdC)
Exosome [BR:rbs04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   RHODOSMS8_00931 (lpdC)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_binding_2 NAD_binding_8 FAD_binding_3 FAD_oxidored HI0933_like DAO Lys_Orn_oxgnase GIDA 2-Hacid_dh_C AlaDh_PNT_C Thi4 3HCDH_N Amino_oxidase Trp_halogenase
Other DBs
NCBI-ProteinID: AWZ00481
UniProt: A0A2Z4UHK3
LinkDB
Position
948398..949795
AA seq 465 aa
MAEKLYDVVVVGSGPGGYVAAIRASQLGLKAAVVERSEIGGICLNWGCIPTKALLRSAEI
YHNIERAEEFGLKVEGLSFDGAKIVERSRAVAGQLSQGVQFLLKKNKVDVIVGNGSLSGK
GKIKVESDGKVTELSAKNIILATGARARTLPGLEPDGETIWSYREAMVPKSIPKSVLVIG
SGAIGIEFASFYKTFGAEVTVVELLDRVLPVEDEEISAFAAKSFKKQGMNLLTGAKVTDL
KKSKSGVTATIDIGGKTETLKAEKVISAVGITGNIEDIGLEKAGVKTDRGHVTVNEWCET
GVPNVYAIGDLVGPPWLAHKASHEGVMVAERIAGVKGVHPMDTTKIPGCTYCHPQVASVG
LTEAAAKKAGHEVKVGRFPFIGNGKAIALGEAEGLIKTVFDAKTGELLGAHMVGAEVTEL
IQGYTIARQLETTEADLMATVFPHPTLSEMMHESVLDAFGRALHI
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggctgaaaaattatatgatgttgttgttgtcggctctggtcctgggggctatgtcgcg
gcgatccgtgcgtctcagctggggctgaaagcggctgttgtagaacggtccgagattggc
ggcatctgtcttaattgggggtgtatcccgaccaaggctctgctcagatctgcggagatc
tatcacaacatagagcgggcagaagagttcggtctcaaagtcgaagggctctcttttgac
ggcgcgaaaatcgttgagcggtcgcgcgccgtggcggggcaactctcgcaaggtgttcag
tttcttctcaagaaaaacaaagtcgatgtcatcgtcggcaatggcagcttgtcgggtaag
ggcaagatcaaagtcgagtccgatggcaaggtgacagagctgtcggctaagaacatcatt
cttgcgaccggcgcgcgtgcacgaaccttgccgggcctcgaacccgatggcgaaacgatc
tggtcctaccgcgaagccatggtgccgaaatccattcccaagtccgtcctggtcattggg
tccggcgccatcgggattgagtttgcaagtttctacaagacctttggtgcagaagtcacg
gttgtggagctgttggaccgcgtccttcccgtagaagatgaagagatatcagcctttgct
gccaagtcgttcaagaagcagggcatgaacctgctgacgggtgcgaaggtcacggacctg
aagaaatcgaaatcgggtgtgacggcaaccatcgacattggtggaaagaccgagacccta
aaagctgagaaagtgatttccgcagtcggcattaccgggaacattgaagacattggtctc
gagaaggctggggtgaaaacggatcgtggccatgtcacggtgaatgaatggtgcgaaacc
ggcgtgccgaacgtctacgccattggtgatctggtcggtcccccttggctggcccacaag
gccagccacgaaggtgtcatggtcgcggaacgaatcgcgggcgtaaaaggcgttcacccc
atggacacaaccaaaatcccgggctgtacttattgtcatccgcaggtggcgagtgtcggc
ctgaccgaggccgcagcaaaaaaggccgggcacgaagtcaaggttgggcgttttcccttt
atcggaaacggtaaagccattgcgctgggtgaggcagaggggctgattaaaacggttttt
gatgcgaaaaccggcgagttgctgggcgcccatatggtgggtgccgaggtcacggagttg
atccagggctatacaatcgctcgtcaattagagacgaccgaagcagatttgatggcaacg
gtgttccctcatccgacattgagtgagatgatgcatgaatccgtgctggacgcttttggg
cgggctttgcacatctga

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